RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 B3GALT2O43825 422 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 CTNND1O60716 968 aaKnown RBP2.9□□□□□ -1.95
PTCH1-223ENST00000551623 ABHD16AO95870 558 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 CSF1RP07333 972 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 CYBAP13498 195 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 ZKSCAN1P17029 563 aaPredicted RBP2.9□□□□□ -1.95
PTCH1-223ENST00000551623 CCND3P30281 292 aaPredicted RBP2.9□□□□□ -1.95
PTCH1-223ENST00000551623 MAPK4P31152 587 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 ADCY8P40145 1251 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 FPGSQ05932 587 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 AIMP1Q12904 312 aaKnown RBP2.9□□□□□ -1.95
PTCH1-223ENST00000551623 RIN1Q13671 783 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 EIF4HQ15056 248 aaKnown RBP2.9□□□□□ -1.95
PTCH1-223ENST00000551623 NFE2L2Q16236 605 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 SLC10A6Q3KNW5 377 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 TRIM60Q495X7 471 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 MFSD14BQ5SR56 506 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 LCE1EQ5T753 118 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 TRIM68Q6AZZ1 485 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 C16orf59Q7L2K0 433 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 FILIP1Q7Z7B0 1213 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 SCYL3Q8IZE3 742 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 ZNF276Q8N554 614 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 ANKRD13CQ8N6S4 541 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 CELF2-AS1Q8N7Q2 184 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 BEND2Q8NDZ0 799 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 SCARB1Q8WTV0 552 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 CPLX3Q8WVH0 158 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 SENP6Q9GZR1 1112 aaPredicted RBP2.9□□□□□ -1.95
PTCH1-223ENST00000551623 GREM2Q9H772 168 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 CHPF2Q9P2E5 772 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 DDX20Q9UHI6 824 aaKnown RBP2.9□□□□□ -1.95
PTCH1-223ENST00000551623 FBXO10Q9UK96 956 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 TBX21Q9UL17 535 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 NUDCQ9Y266 331 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 NPFFR2Q9Y5X5 522 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 MTCH2Q9Y6C9 303 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 FRMPD3Q5JV73 1810 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 ZNF236Q9UL36 1845 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 KIF16BQ96L93 1317 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 ZNF292O60281 2723 aa2.9□□□□□ -1.95
PTCH1-223ENST00000551623 PTPRFP10586 1907 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP2.89□□□□□ -1.95
PTCH1-223ENST00000551623 A0A1W2PQU0 124 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 DCXO43602 365 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 DLX3O60479 287 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 GJB6O95452 261 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 ITGB1P05556 798 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 CLTBP09497 229 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 FGRP09769 529 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 SLC5A1P13866 664 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 HOXA7P31268 230 aaPredicted RBP2.89□□□□□ -1.95
PTCH1-223ENST00000551623 RGS2P41220 211 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 MEOX1P50221 254 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 RBM5P52756 815 aaKnown RBP eCLIP2.89□□□□□ -1.95
PTCH1-223ENST00000551623 TLE2Q04725 743 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 CHRNDQ07001 517 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 NCAPHQ15003 741 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 NTRK3Q16288 839 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 SV2CQ496J9 727 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 RABL3Q5HYI8 236 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 TMEM240Q5SV17 173 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 TREML2Q5T2D2 321 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 LARP1BQ659C4 914 aaKnown RBP2.89□□□□□ -1.95
PTCH1-223ENST00000551623 MFSD5Q6N075 450 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 PSRC1Q6PGN9 363 aaPredicted RBP2.89□□□□□ -1.95
PTCH1-223ENST00000551623 CCDC174Q6PII3 467 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 KCNV1Q6PIU1 500 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 LBX2Q6XYB7 198 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 PRSS33Q8NF86 280 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 THAP3Q8WTV1 239 aaPredicted RBP2.89□□□□□ -1.95
PTCH1-223ENST00000551623 TBC1D22AQ8WUA7 517 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 TEKT1Q969V4 418 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 CFAP53Q96M91 514 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 BUD13Q9BRD0 619 aaKnown RBP eCLIP2.89□□□□□ -1.95
PTCH1-223ENST00000551623 CWC25Q9NXE8 425 aaPredicted RBP2.89□□□□□ -1.95
PTCH1-223ENST00000551623 ACTR10Q9NZ32 417 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 PRKAG3Q9UGI9 489 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 NRBP1Q9UHY1 535 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 TSPYL4Q9UJ04 414 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 CDC42EP3Q9UKI2 254 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 USP24Q9UPU5 2620 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 ATP11BQ9Y2G3 1177 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 INPP5FQ9Y2H2 1132 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 ZHX2Q9Y6X8 837 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 A0A1B0GUL6 1792 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 MAST3O60307 1309 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 PHIPQ8WWQ0 1821 aa2.89□□□□□ -1.95
PTCH1-223ENST00000551623 A0A0G2JMZ2 1700 aa2.88□□□□□ -1.95
PTCH1-223ENST00000551623 A0A1W2PRX2 142 aa2.88□□□□□ -1.95
PTCH1-223ENST00000551623 KBTBD13C9JR72 458 aa2.88□□□□□ -1.95
PTCH1-223ENST00000551623 SEPT4O43236 478 aa2.88□□□□□ -1.95
PTCH1-223ENST00000551623 ENTPD3O75355 529 aa2.88□□□□□ -1.95
PTCH1-223ENST00000551623 KRT37O76014 449 aa2.88□□□□□ -1.95
PTCH1-223ENST00000551623 TIMP1P01033 207 aa2.88□□□□□ -1.95
PTCH1-223ENST00000551623 IGKV5-2P06315 115 aa2.88□□□□□ -1.95
PTCH1-223ENST00000551623 EIF2S2P20042 333 aaKnown RBP2.88□□□□□ -1.95
PTCH1-223ENST00000551623 NR4A1P22736 598 aa2.88□□□□□ -1.95
PTCH1-223ENST00000551623 IGHMBP2P38935 993 aaKnown RBP2.88□□□□□ -1.95
PTCH1-223ENST00000551623 KCNJ6P48051 423 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms