RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 IKBKBO14920 756 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 SYN3O14994 580 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 SPTLC1O15269 473 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 FGFR1OPO95684 399 aaKnown RBP17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 TRIM49P0CI25 452 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 TRIM49CP0CI26 452 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 ERCC5P28715 1186 aaPredicted RBP17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 AARSP49588 968 aaKnown RBP eCLIP17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 HYAL1Q12794 435 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 TRPC3Q13507 836 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 TPD52L1Q16890 204 aaPredicted RBP17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 SV2CQ496J9 727 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 CCDC40Q4G0X9 1142 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 SCARA3Q6AZY7 606 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 PRSS55Q6UWB4 352 aaPredicted RBP17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 LRRC52Q8N7C0 313 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 APPL2Q8NEU8 664 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 CXorf38Q8TB03 319 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 PIK3R5Q8WYR1 880 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 BORCS6Q96GS4 357 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 SENP8Q96LD8 212 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 KLHL5Q96PQ7 755 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 EMILIN2Q9BXX0 1053 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 ANO10Q9NW15 660 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 ARMCX3Q9UH62 379 aaPredicted RBP17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 PCDHB8Q9UN66 801 aa17.49■□□□□ 0.39
CHMP1A-209ENST00000550872 KPNA7A9QM74 516 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 M0QZQ0 153 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 CST3P01034 146 aaPredicted RBP17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 C4BPAP04003 597 aaKnown RBP17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 CNPP09543 421 aaKnown RBP17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 GTF2F1P35269 517 aaKnown RBP eCLIP17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 ENPEPQ07075 957 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 MYO1EQ12965 1108 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 PSMD5Q16401 504 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 DUSP6Q16828 381 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 CT47A1Q5JQC4 288 aaPredicted RBP17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 C1orf220Q5T0J3 134 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 TCERG1LQ5VWI1 586 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 PDXDC1Q6P996 788 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 ANKS3Q6ZW76 656 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 LNX1Q8TBB1 728 aaPredicted RBP17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 HPDLQ96IR7 371 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 MED15Q96RN5 788 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 CDCA3Q99618 268 aaPredicted RBP17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 MMRN2Q9H8L6 949 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 RXFP1Q9HBX9 757 aa17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 METTL14Q9HCE5 456 aaKnown RBP17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 TIMM13Q9Y5L4 95 aaPredicted RBP17.48■□□□□ 0.39
CHMP1A-209ENST00000550872 VWA8A3KMH1 1905 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 ARHGEF37A1IGU5 675 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 CYB561D2O14569 222 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 NCK2O43639 380 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 STX10O60499 249 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 CLASP2O75122 1294 aaKnown RBP17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 LETM1O95202 739 aaPredicted RBP17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 RPL17P18621 184 aaKnown RBP17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 KLRC2P26717 231 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 GCLMP48507 274 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 CREMQ03060 361 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 PPP3CAQ08209 521 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 NFKBIBQ15653 356 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 STX1AQ16623 288 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 VARS2Q5ST30 1063 aaKnown RBP17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 TDRD10Q5VZ19 366 aaKnown RBP17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 EP400NLQ6ZTU2 488 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 SV2AQ7L0J3 742 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 FRMD5Q7Z6J6 570 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 GLYCTKQ8IVS8 523 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 FNIP2Q9P278 1114 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 CHD7Q9P2D1 2997 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 BRWD1Q9NSI6 2320 aa17.47■□□□□ 0.39
CHMP1A-209ENST00000550872 H7C4K7 107 aa17.46■□□□□ 0.39
CHMP1A-209ENST00000550872 TEX28O15482 410 aa17.46■□□□□ 0.39
CHMP1A-209ENST00000550872 GNA14O95837 355 aa17.46■□□□□ 0.39
CHMP1A-209ENST00000550872 ODC1P11926 461 aa17.46■□□□□ 0.39
CHMP1A-209ENST00000550872 TYMPP19971 482 aa17.46■□□□□ 0.39
CHMP1A-209ENST00000550872 MCCD1P59942 119 aaPredicted RBP17.46■□□□□ 0.39
CHMP1A-209ENST00000550872 MYL6P60660 151 aa17.46■□□□□ 0.39
CHMP1A-209ENST00000550872 ZACNQ401N2 412 aa17.46■□□□□ 0.39
CHMP1A-209ENST00000550872 DCAF17Q5H9S7 520 aaPredicted RBP17.46■□□□□ 0.39
CHMP1A-209ENST00000550872 CREBRFQ8IUR6 639 aa17.46■□□□□ 0.39
CHMP1A-209ENST00000550872 EFHBQ8N7U6 833 aa17.46■□□□□ 0.39
CHMP1A-209ENST00000550872 FSD2A1L4K1 749 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 HUS1O60921 280 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 CLSTN1O94985 981 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 VNN1O95497 513 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 ADH1AP07327 375 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 CCDC192P0DO97 292 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 GTF2H1P32780 548 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 NDUFV1P49821 464 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 YWHAHQ04917 246 aaPredicted RBP17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 TYRO3Q06418 890 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 ADAM15Q13444 863 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 NCOA4Q13772 614 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 CTXN3Q4LDR2 81 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 LLGL2Q6P1M3 1020 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 PPFIBP1Q86W92 1011 aa17.45■□□□□ 0.38
CHMP1A-209ENST00000550872 METTL23Q86XA0 190 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms