RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 DDX39AO00148 427 aaKnown RBP7.35□□□□□ -1.23
LIMA1-204ENST00000549064 C2CD2LO14523 706 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 PDPK1O15530 556 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 HBP1O60381 514 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 C22orf31O95567 290 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 GALTP07902 379 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 SPATA31D3P0C874 917 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 ESRRAP11474 423 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-204ENST00000549064 SLC11A1P49279 550 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 CLCN3P51790 818 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 NLRP11P59045 1033 aaKnown RBP7.35□□□□□ -1.23
LIMA1-204ENST00000549064 SHC2P98077 582 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 TRAF1Q13077 416 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 MLF2Q15773 248 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-204ENST00000549064 PCSK7Q16549 785 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 UBE2SQ16763 222 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 PERM1Q5SV97 790 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 PARM1Q6UWI2 310 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 PRR23BQ6ZRT6 265 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 SPATA31D4Q6ZUB0 917 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 CYB5R4Q7L1T6 521 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 METTL13Q8N6R0 699 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 OR6P1Q8NGX9 317 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 FGF14Q92915 247 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 TNPO1Q92973 898 aaKnown RBP7.35□□□□□ -1.23
LIMA1-204ENST00000549064 CUL5Q93034 780 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 ZNF707Q96C28 371 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-204ENST00000549064 BORCS6Q96GS4 357 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 EMILIN2Q9BXX0 1053 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 MRPL9Q9BYD2 267 aaKnown RBP7.35□□□□□ -1.23
LIMA1-204ENST00000549064 LTB4R2Q9NPC1 389 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 JADE2Q9NQC1 790 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 SEMA4GQ9NTN9 838 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 TBC1D13Q9NVG8 400 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 SLC6A14Q9UN76 642 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 POLR3KQ9Y2Y1 108 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-204ENST00000549064 COL4A3BPQ9Y5P4 624 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 IGF2RP11717 2491 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 GREB1Q4ZG55 1949 aa7.35□□□□□ -1.23
LIMA1-204ENST00000549064 CEP295Q9C0D2 2601 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 A0A0U1RQF3 1178 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 CDC14CA4D256 554 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 CSDE1O75534 798 aaKnown RBP7.34□□□□□ -1.23
LIMA1-204ENST00000549064 CCNE2O96020 404 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 AK2P54819 239 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 ITGB3BPQ13352 177 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-204ENST00000549064 SLC44A4Q53GD3 710 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 ZNF468Q5VIY5 522 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-204ENST00000549064 DIEXFQ68CQ4 756 aaKnown RBP7.34□□□□□ -1.23
LIMA1-204ENST00000549064 LAIR1Q6GTX8 287 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 FAM43BQ6ZT52 329 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-204ENST00000549064 ZNF280BQ86YH2 543 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 CCDC60Q8IWA6 550 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-204ENST00000549064 MYL10Q9BUA6 226 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 CHMP4BQ9H444 224 aaKnown RBP7.34□□□□□ -1.23
LIMA1-204ENST00000549064 PIDD1Q9HB75 910 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 PRMT8Q9NR22 394 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-204ENST00000549064 KCNH7Q9NS40 1196 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 RAB23Q9ULC3 237 aa7.34□□□□□ -1.23
LIMA1-204ENST00000549064 COL1A2P08123 1366 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 SMG1Q96Q15 3661 aaKnown RBP7.33□□□□□ -1.24
LIMA1-204ENST00000549064 LAMA5O15230 3695 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 IGKV6D-21A0A0A0MT36 114 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 TEX28O15482 410 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 DNAJC6O75061 913 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 SIN3BO75182 1162 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 GJB6O95452 261 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 GLUD1P00367 558 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 RETP07949 1114 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 IMPDH2P12268 514 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 TDGF1P13385 188 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 ANAPC15P60006 121 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 RPL6Q02878 288 aaKnown RBP7.33□□□□□ -1.24
LIMA1-204ENST00000549064 PRKCQQ04759 706 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 ZNF252P-AS1Q0IIN9 211 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 MTAPQ13126 283 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 SRSF5Q13243 272 aaKnown RBP7.33□□□□□ -1.24
LIMA1-204ENST00000549064 FZD5Q13467 585 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 CSRP2Q16527 193 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 FXNQ16595 210 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 ZNF484Q5JVG2 852 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 ZBTB41Q5SVQ8 909 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 IL31Q6EBC2 164 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 ELMSAN1Q6PJG2 1045 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 UNQ6494/PRO21346Q6UXR6 183 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 TPRG1Q6ZUI0 275 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 TAS1R1Q7RTX1 841 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 PDZD3Q86UT5 571 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 LRRC71Q8N4P6 559 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 PGBD1Q96JS3 809 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 SDF4Q9BRK5 362 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 OSBPL6Q9BZF3 934 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 KRT23Q9C075 422 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 ADAM19Q9H013 955 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 ADAMTS10Q9H324 1103 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 MRPL17Q9NRX2 175 aaKnown RBP7.33□□□□□ -1.24
LIMA1-204ENST00000549064 AKT3Q9Y243 479 aa7.33□□□□□ -1.24
LIMA1-204ENST00000549064 SETXQ7Z333 2677 aaKnown RBP7.33□□□□□ -1.24
LIMA1-204ENST00000549064 SDK1Q7Z5N4 2213 aa7.32□□□□□ -1.24
LIMA1-204ENST00000549064 NFASCO94856 1347 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms