RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 NUP205Q92621 2012 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 TSC2P49815 1807 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 ARHGEF35A5YM69 484 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 MYL4P12829 197 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 MUTP22033 750 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 PROZP22891 400 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 RPL9P32969 192 aaKnown RBP14.05□□□□□ -0.16
USP28-212ENST00000544750 SOX9P48436 509 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 CCINQ13939 588 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 LRRC32Q14392 662 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 ECM1Q16610 540 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 CTXN3Q4LDR2 81 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 DGKKQ5KSL6 1271 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 N4BP2L1Q5TBK1 243 aaPredicted RBP14.05□□□□□ -0.16
USP28-212ENST00000544750 ZNF280DQ6N043 979 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 RNF19BQ6ZMZ0 732 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 WDR5BQ86VZ2 330 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 DIS3L2Q8IYB7 885 aaKnown RBP14.05□□□□□ -0.16
USP28-212ENST00000544750 ELMOD1Q8N336 334 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 DDX12PQ92771 950 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 C18orf25Q96B23 403 aaPredicted RBP14.05□□□□□ -0.16
USP28-212ENST00000544750 LRRC3BQ96PB8 259 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 CCDC94Q9BW85 323 aaPredicted RBP14.05□□□□□ -0.16
USP28-212ENST00000544750 DNAJC25Q9H1X3 360 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 ASAH2Q9NR71 780 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 TOPORSQ9NS56 1045 aaPredicted RBP14.05□□□□□ -0.16
USP28-212ENST00000544750 RXFP3Q9NSD7 469 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 ANGPTL2Q9UKU9 493 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 KIAA1549LQ6ZVL6 1849 aa14.05□□□□□ -0.16
USP28-212ENST00000544750 SLC38A8A6NNN8 435 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 SPECC1L-ADORA2AF8WAN1 911 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 K7ERI5 159 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 CTHP32929 405 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 YARSP54577 528 aaKnown RBP14.04□□□□□ -0.16
USP28-212ENST00000544750 OSTNP61366 133 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 HEATR6Q6AI08 1181 aaKnown RBP14.04□□□□□ -0.16
USP28-212ENST00000544750 APBB1IPQ7Z5R6 666 aaPredicted RBP14.04□□□□□ -0.16
USP28-212ENST00000544750 RALGPS2Q86X27 583 aaPredicted RBP14.04□□□□□ -0.16
USP28-212ENST00000544750 CSGALNACT1Q8TDX6 532 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 KIFAP3Q92845 792 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 IFT74Q96LB3 600 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 TBC1D32Q96NH3 1257 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 CRISPLD1Q9H336 500 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 TMEM134Q9H6X4 195 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 YIPF1Q9Y548 306 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 PHLPP2Q6ZVD8 1323 aa14.04□□□□□ -0.16
USP28-212ENST00000544750 ZZEF1O43149 2961 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 ZNF806P0C7X5 589 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 MCM7P33993 719 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 RAP1GAPP47736 663 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 SF3A2Q15428 464 aaKnown RBP14.03□□□□□ -0.16
USP28-212ENST00000544750 ZNF568Q3ZCX4 644 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 STXBP5Q5T5C0 1151 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 DAW1Q8N136 415 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 NSUN7Q8NE18 718 aaKnown RBP14.03□□□□□ -0.16
USP28-212ENST00000544750 APPL2Q8NEU8 664 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 LOXL4Q96JB6 756 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 ARHGAP28Q9P2N2 729 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 PCDHB8Q9UN66 801 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 NUB1Q9Y5A7 615 aa14.03□□□□□ -0.16
USP28-212ENST00000544750 SCN1AP35498 2009 aa14.02□□□□□ -0.16
USP28-212ENST00000544750 A0A1W2PRU2 124 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 M0QZQ0 153 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 OAZ2O95190 189 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 EPN2O95208 641 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 LARGE1O95461 756 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 MCF2P10911 925 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 NPTX2P47972 431 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 ME3Q16798 604 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 SLC10A6Q3KNW5 377 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 PLA2G2CQ5R387 149 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 IL31Q6EBC2 164 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 GAREM2Q75VX8 874 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 ARID3BQ8IVW6 561 aaPredicted RBP14.02□□□□□ -0.17
USP28-212ENST00000544750 TMEM130Q8N3G9 435 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 SYNPOQ8N3V7 929 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 NECAB1Q8N987 351 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 ERMNQ8TAM6 284 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 GTF3C6Q969F1 213 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 ACAP3Q96P50 834 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 TARS2Q9BW92 718 aaKnown RBP14.02□□□□□ -0.17
USP28-212ENST00000544750 MRPL4Q9BYD3 311 aaKnown RBP14.02□□□□□ -0.17
USP28-212ENST00000544750 ARRDC1-AS1Q9H2J1 176 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 BHMT2Q9H2M3 363 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 GTSE1Q9NYZ3 720 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 ASPMQ8IZT6 3477 aa14.02□□□□□ -0.17
USP28-212ENST00000544750 ATRXP46100 2492 aa14.01□□□□□ -0.17
USP28-212ENST00000544750 CCDC163A0A0D9SF12 145 aa14.01□□□□□ -0.17
USP28-212ENST00000544750 CPB1P15086 417 aa14.01□□□□□ -0.17
USP28-212ENST00000544750 WEE1P30291 646 aa14.01□□□□□ -0.17
USP28-212ENST00000544750 MCM4P33991 863 aa14.01□□□□□ -0.17
USP28-212ENST00000544750 AARSP49588 968 aaKnown RBP eCLIP14.01□□□□□ -0.17
USP28-212ENST00000544750 KPNA1P52294 538 aaPredicted RBP14.01□□□□□ -0.17
USP28-212ENST00000544750 CACNB1Q02641 598 aaPredicted RBP14.01□□□□□ -0.17
USP28-212ENST00000544750 PON2Q15165 354 aa14.01□□□□□ -0.17
USP28-212ENST00000544750 AASDHQ4L235 1098 aaPredicted RBP14.01□□□□□ -0.17
USP28-212ENST00000544750 ARHGAP29Q52LW3 1261 aa14.01□□□□□ -0.17
USP28-212ENST00000544750 PKN3Q6P5Z2 889 aa14.01□□□□□ -0.17
USP28-212ENST00000544750 CEP68Q76N32 757 aa14.01□□□□□ -0.17
USP28-212ENST00000544750 GPIHBP1Q8IV16 184 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms