RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ARHGAP27Q6ZUM4 889 aa14.98□□□□□ -0.01
LIMS1-215ENST00000544547 ALG3Q92685 438 aa14.98□□□□□ -0.01
LIMS1-215ENST00000544547 DENND2DQ9H6A0 471 aaPredicted RBP14.98□□□□□ -0.01
LIMS1-215ENST00000544547 PIDD1Q9HB75 910 aa14.98□□□□□ -0.01
LIMS1-215ENST00000544547 APPL1Q9UKG1 709 aa14.98□□□□□ -0.01
LIMS1-215ENST00000544547 ZBBXA8MT70 800 aa14.98□□□□□ -0.01
LIMS1-215ENST00000544547 LMBRD2Q68DH5 695 aaPredicted RBP14.98□□□□□ -0.01
LIMS1-215ENST00000544547 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.98□□□□□ -0.01
LIMS1-215ENST00000544547 ELMO3Q96BJ8 720 aa14.98□□□□□ -0.01
LIMS1-215ENST00000544547 SERPINI1Q99574 410 aa14.98□□□□□ -0.01
LIMS1-215ENST00000544547 TRPV6Q9H1D0 765 aa14.98□□□□□ -0.01
LIMS1-215ENST00000544547 TSC22D4Q9Y3Q8 395 aa14.98□□□□□ -0.01
LIMS1-215ENST00000544547 TCN1P20061 433 aaPredicted RBP14.97□□□□□ -0.01
LIMS1-215ENST00000544547 ADRA1DP25100 572 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 CHKAP35790 457 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 TMED10P49755 219 aaKnown RBP14.97□□□□□ -0.01
LIMS1-215ENST00000544547 NPEPPSP55786 919 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 GRIK3Q13003 919 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.97□□□□□ -0.01
LIMS1-215ENST00000544547 RIBC1Q8N443 379 aaPredicted RBP14.97□□□□□ -0.01
LIMS1-215ENST00000544547 KCTD6Q8NC69 237 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 ZMAT2Q96NC0 199 aaKnown RBP14.97□□□□□ -0.01
LIMS1-215ENST00000544547 ZMYND8Q9ULU4 1186 aaPredicted RBP14.97□□□□□ -0.01
LIMS1-215ENST00000544547 MYH8P13535 1937 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 LIN7AO14910 233 aaPredicted RBP14.97□□□□□ -0.01
LIMS1-215ENST00000544547 SGPL1O95470 568 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 P4HA1P13674 534 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 RARS2Q5T160 578 aaKnown RBP14.97□□□□□ -0.01
LIMS1-215ENST00000544547 PRUNE1Q86TP1 453 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 MCF2L2Q86YR7 1114 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 TLCD1Q96CP7 247 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 TMEM206Q9H813 350 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 CHST7Q9NS84 486 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 A0A0A6YYK5 440 aaPredicted RBP14.97□□□□□ -0.01
LIMS1-215ENST00000544547 M0QZ92 97 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 GMNNO75496 209 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 CRCPO75575 148 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 KRT10P13645 584 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 RPA3P35244 121 aaPredicted RBP14.97□□□□□ -0.01
LIMS1-215ENST00000544547 FAM47CQ5HY64 1035 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 TMEM270Q6UE05 265 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 GALNT15Q8N3T1 639 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 GABPB2Q8TAK5 448 aaPredicted RBP14.97□□□□□ -0.01
LIMS1-215ENST00000544547 INPP5DQ92835 1189 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 PFDN4Q9NQP4 134 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 FMN2Q9NZ56 1722 aa14.97□□□□□ -0.01
LIMS1-215ENST00000544547 BGNP21810 368 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 YWHAEP62258 255 aaKnown RBP14.96□□□□□ -0.01
LIMS1-215ENST00000544547 PCNX4Q63HM2 1172 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 RNF43Q68DV7 783 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 ANO7Q6IWH7 933 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 LRRC6Q86X45 466 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 HSPH1Q92598 858 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 EIF2AK1Q9BQI3 630 aaKnown RBP14.96□□□□□ -0.01
LIMS1-215ENST00000544547 RUSC1Q9BVN2 902 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 WHRNQ9P202 907 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 ZNF189O75820 626 aaPredicted RBP14.96□□□□□ -0.01
LIMS1-215ENST00000544547 PTK7Q13308 1070 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 RSPH3Q86UC2 560 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 KLHL23Q8NBE8 558 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 PYDC1Q8WXC3 89 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 ZNF75CPQ92670 426 aaPredicted RBP14.96□□□□□ -0.01
LIMS1-215ENST00000544547 SLC16A4O15374 487 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 BBOX1O75936 387 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 TMEM191BP0C7N4 346 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 MCF2P10911 925 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 PSMC1P62191 440 aaKnown RBP14.96□□□□□ -0.01
LIMS1-215ENST00000544547 ZBTB17Q13105 803 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 KHDC1Q4VXA5 237 aaKnown RBP14.96□□□□□ -0.01
LIMS1-215ENST00000544547 SESTD1Q86VW0 696 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 DEPDC1BQ8WUY9 529 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 EPAS1Q99814 870 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 ADPGKQ9BRR6 497 aa14.96□□□□□ -0.01
LIMS1-215ENST00000544547 DMAP1Q9NPF5 467 aaPredicted RBP14.96□□□□□ -0.01
LIMS1-215ENST00000544547 FCHO1O14526 889 aa14.96□□□□□ -0.02
LIMS1-215ENST00000544547 AIM2O14862 343 aa14.96□□□□□ -0.02
LIMS1-215ENST00000544547 MED24O75448 989 aa14.96□□□□□ -0.02
LIMS1-215ENST00000544547 HSPA4LO95757 839 aa14.96□□□□□ -0.02
LIMS1-215ENST00000544547 CATSPER3Q86XQ3 398 aa14.96□□□□□ -0.02
LIMS1-215ENST00000544547 RBM41Q96IZ5 413 aaKnown RBP14.96□□□□□ -0.02
LIMS1-215ENST00000544547 ZNF317Q96PQ6 595 aaPredicted RBP14.96□□□□□ -0.02
LIMS1-215ENST00000544547 CCT7Q99832 543 aa14.96□□□□□ -0.02
LIMS1-215ENST00000544547 SYT15Q9BQS2 421 aa14.96□□□□□ -0.02
LIMS1-215ENST00000544547 CAAP1Q9H8G2 361 aa14.96□□□□□ -0.02
LIMS1-215ENST00000544547 ACP6Q9NPH0 428 aa14.96□□□□□ -0.02
LIMS1-215ENST00000544547 SEPT10Q9P0V9 454 aa14.96□□□□□ -0.02
LIMS1-215ENST00000544547 E2F8A0AVK6 867 aa14.95□□□□□ -0.02
LIMS1-215ENST00000544547 MEI4A8MW99 385 aa14.95□□□□□ -0.02
LIMS1-215ENST00000544547 SH3BP5O60239 455 aa14.95□□□□□ -0.02
LIMS1-215ENST00000544547 GPC4O75487 556 aa14.95□□□□□ -0.02
LIMS1-215ENST00000544547 PAEPP09466 180 aa14.95□□□□□ -0.02
LIMS1-215ENST00000544547 DMP1Q13316 513 aaPredicted RBP14.95□□□□□ -0.02
LIMS1-215ENST00000544547 IRF2BP2Q7Z5L9 587 aa14.95□□□□□ -0.02
LIMS1-215ENST00000544547 TNFRSF25Q93038 417 aa14.95□□□□□ -0.02
LIMS1-215ENST00000544547 L3MBTL3Q96JM7 780 aaPredicted RBP14.95□□□□□ -0.02
LIMS1-215ENST00000544547 DNAJC18Q9H819 358 aa14.95□□□□□ -0.02
LIMS1-215ENST00000544547 JMJD4Q9H9V9 463 aa14.95□□□□□ -0.02
LIMS1-215ENST00000544547 ADA2Q9NZK5 511 aa14.95□□□□□ -0.02
LIMS1-215ENST00000544547 DTNAQ9Y4J8 743 aa14.95□□□□□ -0.02
LIMS1-215ENST00000544547 KLHL33A6NCF5 533 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms