RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 SIP14410 1827 aa14.56□□□□□ -0.08
VPS33A-208ENST00000543633 HNRNPCL1O60812 293 aaKnown RBP14.55□□□□□ -0.08
VPS33A-208ENST00000543633 DKC1O60832 514 aaKnown RBP eCLIP14.55□□□□□ -0.08
VPS33A-208ENST00000543633 FDX1P10109 184 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 ATP2A2P16615 1042 aaKnown RBP14.55□□□□□ -0.08
VPS33A-208ENST00000543633 PTPN7P35236 360 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 CAP2P40123 477 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 C1QBPQ07021 282 aaKnown RBP14.55□□□□□ -0.08
VPS33A-208ENST00000543633 XKR9Q5GH70 373 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 FKBP1CQ5VVH2 108 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 PLEKHA7Q6IQ23 1121 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 SLC39A4Q6P5W5 647 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 RTKN2Q8IZC4 609 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 SUPT20HQ8NEM7 779 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 ZNF398Q8TD17 642 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 PRMT6Q96LA8 375 aaPredicted RBP14.55□□□□□ -0.08
VPS33A-208ENST00000543633 SENP7Q9BQF6 1050 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 TOPORSQ9NS56 1045 aaPredicted RBP14.55□□□□□ -0.08
VPS33A-208ENST00000543633 ADAM22Q9P0K1 906 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 SLC24A2Q9UI40 661 aa14.55□□□□□ -0.08
VPS33A-208ENST00000543633 EXOC1LA0A1B0GW35 172 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 GSTTP1A0A1W2PQM5 241 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 ALDH3A1P30838 453 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 FOXN2P32314 431 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 WDR4P57081 412 aaKnown RBP14.54□□□□□ -0.08
VPS33A-208ENST00000543633 MRPS9P82933 396 aaKnown RBP14.54□□□□□ -0.08
VPS33A-208ENST00000543633 MOGSQ13724 837 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 NAA25Q14CX7 972 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 MORF4L2Q15014 288 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 TMED2Q15363 201 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 TRIP13Q15645 432 aaPredicted RBP14.54□□□□□ -0.08
VPS33A-208ENST00000543633 PDK4Q16654 411 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 UGCGQ16739 394 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 LRRC38Q5VT99 294 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 ANKLE1Q8NAG6 615 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 POMGNT1Q8WZA1 660 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 GPRC5CQ9NQ84 441 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 SLC5A4Q9NY91 659 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 PIM2Q9P1W9 311 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 KCNG1Q9UIX4 513 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 L3MBTL1Q9Y468 752 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 SPDYE2BA6NHP3 402 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 SPDYE6P0CI01 402 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 RASSF2P50749 326 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 NOMO3P69849 1222 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 SF3A3Q12874 501 aaKnown RBP eCLIP14.54□□□□□ -0.08
VPS33A-208ENST00000543633 PSMD6Q15008 389 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 EAPPQ56P03 285 aaPredicted RBP14.54□□□□□ -0.08
VPS33A-208ENST00000543633 ZC3H12AQ5D1E8 599 aaKnown RBP14.54□□□□□ -0.08
VPS33A-208ENST00000543633 WDR44Q5JSH3 913 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 XRRA1Q6P2D8 792 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 RCOR2Q8IZ40 523 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 MCPH1Q8NEM0 835 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 SHOC2Q9UQ13 582 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 DRG1Q9Y295 367 aaKnown RBP14.54□□□□□ -0.08
VPS33A-208ENST00000543633 COL4A5P29400 1685 aa14.54□□□□□ -0.08
VPS33A-208ENST00000543633 YDJCA8MPS7 323 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 LIASO43766 372 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 EDF1O60869 148 aaKnown RBP14.53□□□□□ -0.08
VPS33A-208ENST00000543633 ZBED4O75132 1171 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 RPSAP08865 295 aaKnown RBP14.53□□□□□ -0.08
VPS33A-208ENST00000543633 ZACNQ401N2 412 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 C9orf72Q96LT7 481 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 TRIM6Q9C030 488 aaPredicted RBP14.53□□□□□ -0.08
VPS33A-208ENST00000543633 ETNK1Q9HBU6 452 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 MLXIPLQ9NP71 852 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 DNAJC17Q9NVM6 304 aaKnown RBP14.53□□□□□ -0.08
VPS33A-208ENST00000543633 PKD2L1Q9P0L9 805 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 IP6K2Q9UHH9 426 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 GGT7Q9UJ14 662 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 CNTN6Q9UQ52 1028 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 CNTNAP1P78357 1384 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 NFIBO00712 420 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 TRAFD1O14545 582 aaPredicted RBP14.53□□□□□ -0.08
VPS33A-208ENST00000543633 EXTL3O43909 919 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 GCAP28676 217 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 P3H1Q32P28 736 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 ABRAQ8N0Z2 381 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 KIF2BQ8N4N8 673 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 SYTL5Q8TDW5 730 aaPredicted RBP14.53□□□□□ -0.08
VPS33A-208ENST00000543633 CPA5Q8WXQ8 436 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 AGBL1Q96MI9 1066 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 ZNF570Q96NI8 536 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 SMC6Q96SB8 1091 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 TRABDQ9H4I3 376 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 FBXO28Q9NVF7 368 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 TBK1Q9UHD2 729 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 PHTF1Q9UMS5 762 aa14.53□□□□□ -0.08
VPS33A-208ENST00000543633 WDR46O15213 610 aaKnown RBP14.52□□□□□ -0.09
VPS33A-208ENST00000543633 DIAPH2O60879 1101 aa14.52□□□□□ -0.09
VPS33A-208ENST00000543633 TJP3O95049 919 aa14.52□□□□□ -0.09
VPS33A-208ENST00000543633 TBXAS1P24557 533 aaPredicted RBP14.52□□□□□ -0.09
VPS33A-208ENST00000543633 VPS41P49754 854 aa14.52□□□□□ -0.09
VPS33A-208ENST00000543633 TAS2R40P59535 323 aa14.52□□□□□ -0.09
VPS33A-208ENST00000543633 NFX1Q12986 1120 aaKnown RBP14.52□□□□□ -0.09
VPS33A-208ENST00000543633 MAMLD1Q13495 774 aa14.52□□□□□ -0.09
VPS33A-208ENST00000543633 PGM5Q15124 567 aa14.52□□□□□ -0.09
VPS33A-208ENST00000543633 WASHC2DQ5SRD0 308 aa14.52□□□□□ -0.09
VPS33A-208ENST00000543633 MIS18BP1Q6P0N0 1132 aa14.52□□□□□ -0.09
VPS33A-208ENST00000543633 BZW1Q7L1Q6 419 aaKnown RBP14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms