RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 TAF4BQ92750 862 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 RAB20Q9NX57 234 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 TAB2Q9NYJ8 693 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 LZTS1Q9Y250 596 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 GBF1Q92538 1859 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 SPTLC1O15269 473 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 STAU1O95793 577 aaKnown RBP18.42■□□□□ 0.54
LIG1-204ENST00000542460 EFEMP2O95967 443 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 BRCC3P46736 316 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 AARSP49588 968 aaKnown RBP eCLIP18.42■□□□□ 0.545e-7■■■■■ 34.9
LIG1-204ENST00000542460 UBE3AQ05086 875 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 GPM6BQ13491 265 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 TIGD5Q53EQ6 642 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 CCDC150Q8NCX0 1101 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 GPR62Q9BZJ7 368 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 IMPG2Q9BZV3 1241 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 XYLT2Q9H1B5 865 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 VPS16Q9H269 839 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 VRTNQ9H8Y1 702 aa18.42■□□□□ 0.54
LIG1-204ENST00000542460 ALG13Q9NP73 1137 aaKnown RBP18.42■□□□□ 0.54
LIG1-204ENST00000542460 PES1O00541 588 aaKnown RBP18.41■□□□□ 0.54
LIG1-204ENST00000542460 COPB1P53618 953 aaKnown RBP18.41■□□□□ 0.54
LIG1-204ENST00000542460 ZNF699Q32M78 642 aa18.41■□□□□ 0.54
LIG1-204ENST00000542460 DSTYKQ6XUX3 929 aa18.41■□□□□ 0.54
LIG1-204ENST00000542460 GAS2L3Q86XJ1 694 aa18.41■□□□□ 0.54
LIG1-204ENST00000542460 SPPL3Q8TCT6 385 aa18.41■□□□□ 0.54
LIG1-204ENST00000542460 SUSD3Q96L08 255 aa18.41■□□□□ 0.54
LIG1-204ENST00000542460 CHD9Q3L8U1 2897 aa18.41■□□□□ 0.54
LIG1-204ENST00000542460 GTPBP10A4D1E9 387 aaKnown RBP18.4■□□□□ 0.54
LIG1-204ENST00000542460 M0QZQ0 153 aa18.4■□□□□ 0.54
LIG1-204ENST00000542460 ASS1P00966 412 aaKnown RBP18.4■□□□□ 0.54
LIG1-204ENST00000542460 SOD2P04179 222 aa18.4■□□□□ 0.54
LIG1-204ENST00000542460 WDR72Q3MJ13 1102 aa18.4■□□□□ 0.54
LIG1-204ENST00000542460 WDR44Q5JSH3 913 aa18.4■□□□□ 0.54
LIG1-204ENST00000542460 FAM171A1Q5VUB5 890 aa18.4■□□□□ 0.54
LIG1-204ENST00000542460 APTXQ7Z2E3 356 aaKnown RBP18.4■□□□□ 0.54
LIG1-204ENST00000542460 RNF168Q8IYW5 571 aaPredicted RBP18.4■□□□□ 0.54
LIG1-204ENST00000542460 SEMA4DQ92854 862 aa18.4■□□□□ 0.54
LIG1-204ENST00000542460 SENP8Q96LD8 212 aa18.4■□□□□ 0.54
LIG1-204ENST00000542460 VN1R3Q9BXE9 311 aa18.4■□□□□ 0.54
LIG1-204ENST00000542460 GDAP2Q9NXN4 497 aa18.4■□□□□ 0.54
LIG1-204ENST00000542460 ARHGEF37A1IGU5 675 aa18.39■□□□□ 0.54
LIG1-204ENST00000542460 I3L4J1 428 aa18.39■□□□□ 0.54
LIG1-204ENST00000542460 CLSTN1O94985 981 aa18.39■□□□□ 0.54
LIG1-204ENST00000542460 USP41Q3LFD5 358 aa18.39■□□□□ 0.54
LIG1-204ENST00000542460 ZNF697Q5TEC3 545 aa18.39■□□□□ 0.54
LIG1-204ENST00000542460 GBP6Q6ZN66 633 aa18.39■□□□□ 0.54
LIG1-204ENST00000542460 VPS52Q8N1B4 723 aa18.39■□□□□ 0.54
LIG1-204ENST00000542460 EHBP1Q8NDI1 1231 aa18.39■□□□□ 0.54
LIG1-204ENST00000542460 POF1BQ8WVV4 589 aa18.39■□□□□ 0.54
LIG1-204ENST00000542460 TTYH1Q9H313 450 aaPredicted RBP18.39■□□□□ 0.54
LIG1-204ENST00000542460 SNX9Q9Y5X1 595 aa18.39■□□□□ 0.54
LIG1-204ENST00000542460 CYB561D2O14569 222 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 SYN3O14994 580 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 GRM6O15303 877 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 SERPINC1P01008 464 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 ODC1P11926 461 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 P4HA1P13674 534 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 FILIP1LQ4L180 1135 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 ZNF667Q5HYK9 610 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 FKBP15Q5T1M5 1219 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.39■□□□□ 0.53
LIG1-204ENST00000542460 DPH6Q7L8W6 267 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 TAS1R1Q7RTX1 841 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 APPL2Q8NEU8 664 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 FAM161BQ96MY7 647 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 PI4K2AQ9BTU6 479 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 TTPALQ9BTX7 342 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 HERC2P3Q9BVR0 1158 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 RBSNQ9H1K0 784 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 CHST7Q9NS84 486 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 MTMR10Q9NXD2 777 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 PCDHB8Q9UN66 801 aa18.39■□□□□ 0.53
LIG1-204ENST00000542460 EPOPA6NHQ4 379 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 LGALS16A8MUM7 142 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 HUS1O60921 280 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 LRRN2O75325 713 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 FGFR3P22607 806 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 TNNC1P63316 161 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 NOP14P78316 857 aaKnown RBP18.38■□□□□ 0.53
LIG1-204ENST00000542460 FANCCQ00597 558 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 BMS1Q14692 1282 aaKnown RBP18.38■□□□□ 0.53
LIG1-204ENST00000542460 EXOC3L4Q17RC7 722 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 KIAA1841Q6NSI8 718 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 CEP57Q86XR8 500 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 TOP6BLQ8N6T0 577 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 LMO3Q8TAP4 145 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 MMS19Q96T76 1030 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 LMAN2LQ9H0V9 348 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 TLR9Q9NR96 1032 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 GCNT4Q9P109 453 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 NXF1Q9UBU9 619 aaKnown RBP18.38■□□□□ 0.53
LIG1-204ENST00000542460 DSEQ9UL01 958 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 KIAA1671Q9BY89 1806 aa18.38■□□□□ 0.53
LIG1-204ENST00000542460 CDH23Q9H251 3354 aa18.37■□□□□ 0.53
LIG1-204ENST00000542460 TYMPP19971 482 aa18.37■□□□□ 0.53
LIG1-204ENST00000542460 DNAJB1P25685 340 aa18.37■□□□□ 0.53
LIG1-204ENST00000542460 TKTP29401 623 aaKnown RBP18.37■□□□□ 0.53
LIG1-204ENST00000542460 SPOPLQ6IQ16 392 aa18.37■□□□□ 0.53
LIG1-204ENST00000542460 TMC7Q7Z402 723 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms