RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	IL17RB	Q9NRM6	502 aa		5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	ADARB2	Q9NS39	739 aa	Known RBP	5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	TMEM74B	Q9NUR3	256 aa		5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	PCDHB1	Q9Y5F3	818 aa		5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	LRRC14B	A6NHZ5	514 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	INO80B-WBP1	J3KQ70	363 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	CCND1	P24385	295 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	WAS	P42768	502 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	KRTAP10-6	P60371	365 aa	Predicted RBP	5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	SIM1	P81133	766 aa	Predicted RBP	5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	MC2R	Q01718	297 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	FPGS	Q05932	587 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	ZNF169	Q14929	603 aa	Predicted RBP	5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	PREPL	Q4J6C6	727 aa	Predicted RBP	5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	EPHA10	Q5JZY3	1008 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	EFCAB2	Q5VUJ9	269 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	SLC30A10	Q6XR72	485 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	TMIE	Q8NEW7	156 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	CAGE1	Q8TC20	777 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	SSH1	Q8WYL5	1049 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	KLHL32	Q96NJ5	620 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	INO80B	Q9C086	356 aa	Predicted RBP	5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	SLAMF7	Q9NQ25	335 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	KCTD5	Q9NXV2	234 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	TNKS	O95271	1327 aa		5.19	□□□□□ -1.58
PRKDC-210	ENST00000541488	TOR1B	O14657	336 aa		5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	PEX1	O43933	1283 aa		5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	ZNF37A	P17032	561 aa	Predicted RBP	5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	KHDC1	Q4VXA5	237 aa	Known RBP	5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	ZNF362	Q5T0B9	420 aa	Predicted RBP	5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	PRIMA1	Q86XR5	153 aa		5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488		Q8NA96	180 aa		5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	TOR1AIP2	Q8NFQ8	470 aa		5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	SLC30A5	Q8TAD4	765 aa		5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	MRGPRX4	Q96LA9	322 aa		5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	DUSP26	Q9BV47	211 aa		5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	DMTF1	Q9Y222	760 aa		5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	POLR2A	P24928	1970 aa	Known RBP	5.18	□□□□□ -1.58
PRKDC-210	ENST00000541488	GATA3	P23771	443 aa		5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	PHKA1	P46020	1223 aa		5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	PSMC1	P62191	440 aa	Known RBP	5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	TLE1	Q04724	770 aa		5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	ZNF844	Q08AG5	666 aa		5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	COLEC12	Q5KU26	742 aa		5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	PDPR	Q8NCN5	879 aa		5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	TFAP2B	Q92481	460 aa		5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	MED15	Q96RN5	788 aa		5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	DMRTA2	Q96SC8	542 aa		5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	TMX1	Q9H3N1	280 aa		5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	ASB6	Q9NWX5	421 aa		5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	5.17	□□□□□ -1.58
PRKDC-210	ENST00000541488	MYADML2	A6NDP7	307 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	YY2	O15391	372 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	CHRM2	P08172	466 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	KCNA2	P16389	499 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	AKNAD1	Q5T1N1	836 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	PPP4R3A	Q6IN85	833 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	ZNF365	Q70YC5	407 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	CLNK	Q7Z7G1	428 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	CFAP52	Q8N1V2	620 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	IL17RD	Q8NFM7	739 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	ZNF384	Q8TF68	577 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	LPIN2	Q92539	896 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	FBXL20	Q96IG2	436 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	LRIG1	Q96JA1	1093 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	SPATA5L1	Q9BVQ7	753 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	KLK15	Q9H2R5	256 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	MRPS18A	Q9NVS2	196 aa	Known RBP	5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	JKAMP	Q9P055	326 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	FOXJ2	Q9P0K8	574 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	CTTNBP2NL	Q9P2B4	639 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	WASHC2C	Q9Y4E1	1318 aa		5.16	□□□□□ -1.58
PRKDC-210	ENST00000541488	PRAMEF33	A0A0G2JMD5	474 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	SGTA	O43765	313 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	PRAMEF10	O60809	474 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	SLC43A1	O75387	559 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	SUN1	O94901	812 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	MAL	P21145	153 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	RARRES1	P49788	294 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	SNAPC2	Q13487	334 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	RAB39A	Q14964	217 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	MIER2	Q8N344	545 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	LNX2	Q8N448	690 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	SLC9A6	Q92581	669 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	FUBP1	Q96AE4	644 aa	Known RBP	5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	LRFN3	Q9BTN0	628 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	C1orf43	Q9BWL3	253 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	ALG13	Q9NP73	1137 aa	Known RBP	5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	PCDHA3	Q9Y5H8	950 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	CADPS	Q9ULU8	1353 aa		5.15	□□□□□ -1.59
PRKDC-210	ENST00000541488	CCDC195	A0A1B0GUA6	201 aa		5.14	□□□□□ -1.59
PRKDC-210	ENST00000541488	ZNF785	A8K8V0	405 aa		5.14	□□□□□ -1.59
PRKDC-210	ENST00000541488		E9PLN8	166 aa		5.14	□□□□□ -1.59
PRKDC-210	ENST00000541488	F2RL2	O00254	374 aa		5.14	□□□□□ -1.59
PRKDC-210	ENST00000541488	VPS4B	O75351	444 aa		5.14	□□□□□ -1.59
PRKDC-210	ENST00000541488	MATN4	O95460	622 aa		5.14	□□□□□ -1.59
PRKDC-210	ENST00000541488	IGLV2-14	P01704	120 aa		5.14	□□□□□ -1.59
PRKDC-210	ENST00000541488	PPP3CB	P16298	524 aa		5.14	□□□□□ -1.59
PRKDC-210	ENST00000541488	CHRM3	P20309	590 aa		5.14	□□□□□ -1.59
PRKDC-210	ENST00000541488	RPS7	P62081	194 aa	Known RBP	5.14	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms