RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 CACNA1AO00555 2505 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 ZNF292O60281 2723 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 MIA3Q5JRA6 1907 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 TTC26A0AVF1 554 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 SLC26A4O43511 780 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 XPOTO43592 962 aaKnown RBP13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 CXCL8P10145 99 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 MLLT6P55198 1093 aaPredicted RBP13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 GRM2Q14416 872 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 PPP2R5DQ14738 602 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 ZBTB6Q15916 424 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 ARL6IP4Q66PJ3 421 aaKnown RBP13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 C1orf228Q6PIY5 440 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 VITQ6UXI7 678 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 RNF19BQ6ZMZ0 732 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 HS6ST3Q8IZP7 471 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 MSANTD3Q96H12 275 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 PNMA5Q96PV4 448 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 CHRDQ9H2X0 955 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 NCDNQ9UBB6 729 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 COL4A3Q01955 1670 aa13.08□□□□□ -0.32
CBX3P4-202ENST00000540428 OR6C75A6NL08 312 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 PLA2G4BP0C869 781 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 MYL4P12829 197 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 SDHBP21912 280 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 PAX3P23760 479 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 GDI1P31150 447 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 MATR3P43243 847 aaKnown RBP eCLIP13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 NRLP54845 237 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 NCKAP1LP55160 1127 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 PPP2R3AQ06190 1150 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 RAD51AP2Q09MP3 1159 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 MTAPQ13126 283 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 GPR17Q13304 367 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 ZRSR1Q15695 479 aaKnown RBP13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 TMEM119Q4V9L6 283 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 SEZ6Q53EL9 994 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 MFSD6LQ8IWD5 586 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 FAM3CQ92520 227 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 KIF12Q96FN5 646 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 CDK5RAP3Q96JB5 506 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 ZSWIM3Q96MP5 696 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 ODF2LQ9ULJ1 636 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 SMG5Q9UPR3 1016 aaKnown RBP13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 YIPF1Q9Y548 306 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 TRIP11Q15643 1979 aa13.07□□□□□ -0.32
CBX3P4-202ENST00000540428 GPR179Q6PRD1 2367 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 ZNF263O14978 683 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 PIGRP01833 764 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 ADRB2P07550 413 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 TDGF1P13385 188 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 TYMPP19971 482 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 MYBPC2Q14324 1141 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 MCTP1Q6DN14 999 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 HAUS6Q7Z4H7 955 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 USP37Q86T82 979 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 CD302Q8IX05 232 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 ZSCAN18Q8TBC5 510 aaPredicted RBP13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 BICD1Q96G01 975 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 AK8Q96MA6 479 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 LRRC3Q9BY71 257 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 HAPLN2Q9GZV7 340 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 HSFX1Q9UBD0 423 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 NDRG2Q9UN36 371 aaKnown RBP13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 ASB3Q9Y575 518 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 PIAS3Q9Y6X2 628 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 PATJQ8NI35 1801 aa13.06□□□□□ -0.32
CBX3P4-202ENST00000540428 MED19A0JLT2 244 aaPredicted RBP13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 VWA3AA6NCI4 1184 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 HEPACAM2A8MVW5 462 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 PRR5-ARHGAP8B1AHC4 643 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 ARNTLO00327 626 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 NRG2O14511 850 aaPredicted RBP13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 OGTO15294 1046 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 CHADO15335 359 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 FAM189A1O60320 539 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 VNN2O95498 520 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 GJA1P17302 382 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 ABCD1P33897 745 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 VIPR2P41587 438 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 ALDH1A3P47895 512 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 LIG4P49917 911 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 CCR3P51677 355 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 EPHB3P54753 998 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 ARHGAP8P85298 464 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 TEAD2Q15562 447 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 RSPO4Q2I0M5 234 aaPredicted RBP13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 ARSHQ5FYA8 562 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 SPATA1Q5VX52 437 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 TSSK4Q6SA08 328 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 DSTYKQ6XUX3 929 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 TMC8Q8IU68 726 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 SHKBP1Q8TBC3 707 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 DNAJC25Q9H1X3 360 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 SLITRK6Q9H5Y7 841 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 C8orf33Q9H7E9 229 aaPredicted RBP13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 LMAN1LQ9HAT1 526 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 TIMM13Q9Y5L4 95 aaPredicted RBP13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 CITO14578 2027 aa13.05□□□□□ -0.32
CBX3P4-202ENST00000540428 A0A1W2PRU2 124 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms