RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 KRT3P12035 628 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 FGFR4P22455 802 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 PIGHQ14442 188 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-213ENST00000540338 TRADDQ15628 312 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 KDM7AQ6ZMT4 941 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 ZNF606Q8WXB4 792 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 HAUS1Q96CS2 278 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 MCEEQ96PE7 176 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 NIFKQ9BYG3 293 aaKnown RBP11.43□□□□□ -0.58
CLIP1-213ENST00000540338 STX2P32856 288 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 ZNF484Q5JVG2 852 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 TTC39CQ8N584 583 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 C1orf131Q8NDD1 294 aaKnown RBP11.42□□□□□ -0.58
CLIP1-213ENST00000540338 NLGN2Q8NFZ4 835 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 FAM84AQ96KN4 292 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 CFAP57Q96MR6 1250 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 FAM129AQ9BZQ8 928 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 BTBD7Q9P203 1132 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 STXBP5LQ9Y2K9 1186 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 SNCAIPQ9Y6H5 919 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 GMNCA6NCL1 334 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 PSTPIP1O43586 416 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 XPOTO43592 962 aaKnown RBP11.42□□□□□ -0.58
CLIP1-213ENST00000540338 CALCAP01258 141 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 IFNAR2P48551 515 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 CENPCQ03188 943 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 C1QBPQ07021 282 aaKnown RBP11.42□□□□□ -0.58
CLIP1-213ENST00000540338 AADACL2Q6P093 401 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 CAPN12Q6ZSI9 719 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 TRMT10CQ7L0Y3 403 aaKnown RBP11.42□□□□□ -0.58
CLIP1-213ENST00000540338 EFCAB13Q8IY85 973 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 TTC13Q8NBP0 860 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 ACAP3Q96P50 834 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 TRAIPQ9BWF2 469 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 CISHQ9NSE2 258 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 NOCTQ9UK39 431 aaKnown RBP11.42□□□□□ -0.58
CLIP1-213ENST00000540338 A0A0B4J269 797 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 M0QYV0 167 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 PEX10O60683 326 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 RARAP10276 462 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 PHBP35232 272 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 MARCKSL1P49006 195 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 IFT88Q13099 833 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 SH3D19Q5HYK7 790 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 CELF3Q5SZQ8 465 aaKnown RBP11.42□□□□□ -0.58
CLIP1-213ENST00000540338 TMC3Q7Z5M5 1100 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 PALM2Q8IXS6 379 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 IQCKQ8N0W5 287 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 LMO3Q8TAP4 145 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 PLEKHO2Q8TD55 490 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 CDCA5Q96FF9 252 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 KLHL11Q9NVR0 708 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 WDR35Q9P2L0 1181 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 PRDM4Q9UKN5 801 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 AGAP1Q9UPQ3 857 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 MYO1CO00159 1063 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 ACKR2O00590 384 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 LSP1P33241 339 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 EPHX2P34913 555 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 ARL2P36404 184 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 HADHBP55084 474 aaKnown RBP11.42□□□□□ -0.58
CLIP1-213ENST00000540338 ENPEPQ07075 957 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 MKRN4PQ13434 485 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-213ENST00000540338 SLC29A2Q14542 456 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 UAP1Q16222 522 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-213ENST00000540338 IZUMO3Q5VZ72 239 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 NLRP14Q86W24 1093 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 FBXL18Q96ME1 805 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 IQCGQ9H095 443 aaKnown RBP11.42□□□□□ -0.58
CLIP1-213ENST00000540338 EPN3Q9H201 632 aa11.42□□□□□ -0.58
CLIP1-213ENST00000540338 LRRC37AA6NMS7 1700 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 MCF2LO15068 1137 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 CHRNB2P17787 502 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 SESTD1Q86VW0 696 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 CD302Q8IX05 232 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 TAB3Q8N5C8 712 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-213ENST00000540338 C7orf31Q8N865 590 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 ZNF518BQ9C0D4 1074 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 ASNSD1Q9NWL6 643 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 POC1B-GALNT4F8VUJ3 575 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 H7C0C1 242 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 PRPSAP2O60256 369 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 ATP5OP48047 213 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 LIG3P49916 1009 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 SF3A3Q12874 501 aaKnown RBP eCLIP11.41□□□□□ -0.58
CLIP1-213ENST00000540338 PPIL2Q13356 520 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 CCDC91Q7Z6B0 441 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 REPS2Q8NFH8 660 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 TRAPPC12Q8WVT3 735 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 KIF12Q96FN5 646 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 PCSK1NQ9UHG2 260 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 ANKRD65E5RJM6 399 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 M0QZ92 97 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 LSM8O95777 96 aaKnown RBP11.41□□□□□ -0.58
CLIP1-213ENST00000540338 CETPP11597 493 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 RBP5P82980 135 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 TMEM132DQ14C87 1099 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 C2orf69Q8N8R5 385 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 PRELID2Q8N945 189 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 OR5B17Q8NGF7 314 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms