RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 CDX2Q99626 313 aaPredicted RBP20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 VRTNQ9H8Y1 702 aa20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 AJAP1Q9UKB5 411 aaPredicted RBP20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 FHOD1Q9Y613 1164 aa20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 CLSTN1O94985 981 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 STAU1O95793 577 aaKnown RBP20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 GYPCP04921 128 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 TRIM21P19474 475 aaKnown RBP20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 RPL9P32969 192 aaKnown RBP20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 POLR2FP61218 127 aaKnown RBP20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 TBX2Q13207 712 aaPredicted RBP20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 FIGNQ5HY92 759 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 CCDC150Q8NCX0 1101 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 C3orf58Q8NDZ4 430 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 PHOSPHO2Q8TCD6 241 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 TAF4BQ92750 862 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 KAT5Q92993 513 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 DDX27Q96GQ7 796 aaKnown RBP20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 UROC1Q96N76 676 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 FAM193BQ96PV7 902 aaPredicted RBP20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 NUP58Q9BVL2 599 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 LCHNA4D1U4 455 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 RNF225M0QZC1 329 aaPredicted RBP20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 SPTLC1O15269 473 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 WDR72Q3MJ13 1102 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 IQCEQ6IPM2 695 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 RRAGAQ7L523 313 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 PPM1KQ8N3J5 372 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 CPLX3Q8WVH0 158 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 PDLIM2Q96JY6 352 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 YME1L1Q96TA2 773 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 ZNF576Q9H609 170 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 UBE2TQ9NPD8 197 aaPredicted RBP20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 DNAJC12Q9UKB3 198 aa20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 YBX2Q9Y2T7 364 aaKnown RBP20.32■□□□□ 0.84
TNFRSF1A-213ENST00000540022 UNC80Q8N2C7 3258 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 F8W810 466 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 ARHGEF15O94989 841 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 PNPLA4P41247 253 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 TAF6P49848 677 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 HTRA4P83105 476 aaPredicted RBP20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 MYO1EQ12965 1108 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 RAB30Q15771 203 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 ZNF667Q5HYK9 610 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 CD300LGQ6UXG3 332 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 CMTR2Q8IYT2 770 aaKnown RBP20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 ZNF560Q96MR9 790 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 KREMEN1Q96MU8 473 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 ZBED2Q9BTP6 218 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 NAA15Q9BXJ9 866 aaKnown RBP20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 CWH43Q9H720 699 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 NLRC4Q9NPP4 1024 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 CEP72Q9P209 647 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 NXF1Q9UBU9 619 aaKnown RBP20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 FBXL5Q9UKA1 691 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 POLIQ9UNA4 740 aa20.31■□□□□ 0.84
TNFRSF1A-213ENST00000540022 B3GAT3O94766 335 aa20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 CASP14P31944 242 aa20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 OR1G1P47890 313 aa20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 LILRA4P59901 499 aa20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 BTG3Q14201 252 aaPredicted RBP20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 GRIN2CQ14957 1233 aa20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 PPFIBP1Q86W92 1011 aa20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 ARID3AQ99856 593 aa20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 NIF3L1Q9GZT8 377 aa20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 PRG3Q9Y2Y8 225 aaPredicted RBP20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 TRIP11Q15643 1979 aa20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 PDCD11Q14690 1871 aaKnown RBP20.3■□□□□ 0.84
TNFRSF1A-213ENST00000540022 KPNA7A9QM74 516 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 TLL1O43897 1013 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 KIF4AO95239 1232 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 ITGB1P05556 798 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 ASPAP45381 313 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 SLC11A1P49279 550 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 GCNT1Q02742 428 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 CUL2Q13617 745 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 TRIM14Q14142 442 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 SV2CQ496J9 727 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 DCLRE1AQ6PJP8 1040 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 SPRED2Q7Z698 418 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 MYLIPQ8WY64 445 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 BAP1Q92560 729 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 EDEM3Q9BZQ6 932 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 MSRAQ9UJ68 235 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 CAPN11Q9UMQ6 739 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 SNX9Q9Y5X1 595 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 A0A0C4DFX4 3053 aa20.29■□□□□ 0.84
TNFRSF1A-213ENST00000540022 A0A1W2PQJ5 194 aa20.28■□□□□ 0.84
TNFRSF1A-213ENST00000540022 NRP1O14786 923 aa20.28■□□□□ 0.84
TNFRSF1A-213ENST00000540022 ALDH2P05091 517 aa20.28■□□□□ 0.84
TNFRSF1A-213ENST00000540022 GALTP07902 379 aa20.28■□□□□ 0.84
TNFRSF1A-213ENST00000540022 RFX1P22670 979 aa20.28■□□□□ 0.84
TNFRSF1A-213ENST00000540022 PBX3P40426 434 aa20.28■□□□□ 0.84
TNFRSF1A-213ENST00000540022 GOLGA8FQ08AF8 430 aa20.28■□□□□ 0.84
TNFRSF1A-213ENST00000540022 GOLGA8DPQ0D2H9 430 aa20.28■□□□□ 0.84
TNFRSF1A-213ENST00000540022 RAPGEF1Q13905 1077 aa20.28■□□□□ 0.84
TNFRSF1A-213ENST00000540022 ARHGAP44Q17R89 818 aa20.28■□□□□ 0.84
TNFRSF1A-213ENST00000540022 SCARA5Q6ZMJ2 495 aa20.28■□□□□ 0.84
TNFRSF1A-213ENST00000540022 CACNA2D4Q7Z3S7 1137 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms