RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 MAPK6Q16659 721 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 GLE1Q53GS7 698 aaKnown RBP11.48□□□□□ -0.57
CLIP1-210ENST00000538120 WDR44Q5JSH3 913 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 DCAF12L1Q5VU92 463 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 TSHZ1Q6ZSZ6 1077 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 GPR142Q7Z601 462 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 LINC01465Q8N7H1 131 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 AFG1LQ8WV93 481 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 CASKIN2Q8WXE0 1202 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 RUBCNQ92622 972 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 EMID1Q96A84 441 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-210ENST00000538120 FAM81BQ96LP2 452 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 KRT12Q99456 494 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 GDF3Q9NR23 364 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 CPSF3Q9UKF6 684 aaKnown RBP11.48□□□□□ -0.57
CLIP1-210ENST00000538120 NUB1Q9Y5A7 615 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 UMODL1Q5DID0 1318 aa11.48□□□□□ -0.57
CLIP1-210ENST00000538120 MYO1FO00160 1098 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 ACKR2O00590 384 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 CST3P01034 146 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-210ENST00000538120 IQCF3P0C7M6 154 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 SEC24CP53992 1094 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 PTENP60484 403 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 MBTD1Q05BQ5 628 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 GRM1Q13255 1194 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 CUL2Q13617 745 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 GRB14Q14449 540 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 CLEC16AQ2KHT3 1053 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 ZNF484Q5JVG2 852 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 CFAP58Q5T655 872 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 ACAD10Q6JQN1 1059 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 PPTC7Q8NI37 304 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 NLRP4Q96MN2 994 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 JPH2Q9BR39 696 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-210ENST00000538120 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLIP1-210ENST00000538120 C16orf70Q9BSU1 422 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 FAM107BQ9H098 131 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 C2orf40Q9H1Z8 148 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 RRAGCQ9HB90 399 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 CTTNBP2NLQ9P2B4 639 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 ALG6Q9Y672 507 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 OGTO15294 1046 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 CELF2O95319 508 aaKnown RBP11.47□□□□□ -0.57
CLIP1-210ENST00000538120 TNFRSF8P28908 595 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 LSP1P33241 339 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 EEF1DP3Q658K8 133 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 C11orf63Q6NUN7 778 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 SUGP1Q8IWZ8 645 aaKnown RBP11.47□□□□□ -0.57
CLIP1-210ENST00000538120 IFT20Q8IY31 132 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 TCHPQ9BT92 498 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 CNTN6Q9UQ52 1028 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 NOC2LQ9Y3T9 749 aaKnown RBP11.47□□□□□ -0.57
CLIP1-210ENST00000538120 CAPN7Q9Y6W3 813 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 PLXNB2O15031 1838 aa11.47□□□□□ -0.57
CLIP1-210ENST00000538120 CLTAP09496 248 aa11.46□□□□□ -0.57
CLIP1-210ENST00000538120 UNGP13051 313 aaPredicted RBP11.46□□□□□ -0.57
CLIP1-210ENST00000538120 IGBP1P78318 339 aa11.46□□□□□ -0.57
CLIP1-210ENST00000538120 NCOA4Q13772 614 aa11.46□□□□□ -0.57
CLIP1-210ENST00000538120 WDR49Q8IV35 697 aa11.46□□□□□ -0.57
CLIP1-210ENST00000538120 UBR7Q8N806 425 aa11.46□□□□□ -0.57
CLIP1-210ENST00000538120 C2orf69Q8N8R5 385 aa11.46□□□□□ -0.57
CLIP1-210ENST00000538120 MAML3Q96JK9 1138 aa11.46□□□□□ -0.57
CLIP1-210ENST00000538120 YY1AP1Q9H869 796 aa11.46□□□□□ -0.57
CLIP1-210ENST00000538120 IFT122Q9HBG6 1241 aa11.46□□□□□ -0.57
CLIP1-210ENST00000538120 NPDC1Q9NQX5 325 aaPredicted RBP11.46□□□□□ -0.57
CLIP1-210ENST00000538120 TTC7AQ9ULT0 858 aaPredicted RBP11.46□□□□□ -0.57
CLIP1-210ENST00000538120 PGRMC1O00264 195 aaKnown RBP11.46□□□□□ -0.58
CLIP1-210ENST00000538120 ASAP2O43150 1006 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 CFHP08603 1231 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 ZNF286BP0CG31 522 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 ITGA4P13612 1032 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 SMPD1P17405 629 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 TFDP1Q14186 410 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 ATF7IP2Q5U623 682 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 CST9Q5W186 159 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 MPZL3Q6UWV2 235 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 CDR2LQ86X02 465 aaPredicted RBP11.46□□□□□ -0.58
CLIP1-210ENST00000538120 CPNE8Q86YQ8 564 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 KLHL7Q8IXQ5 586 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 ZNF687Q8N1G0 1237 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 NPLOC4Q8TAT6 608 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 ALG3Q92685 438 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 CALR3Q96L12 384 aaKnown RBP11.46□□□□□ -0.58
CLIP1-210ENST00000538120 AP1M1Q9BXS5 423 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 KLHL42Q9P2K6 505 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 GTF3C4Q9UKN8 822 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 PCDHB2Q9Y5E7 798 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 IVNS1ABPQ9Y6Y0 642 aa11.46□□□□□ -0.58
CLIP1-210ENST00000538120 PLXNA1Q9UIW2 1896 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 INO80B-WBP1J3KQ70 363 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 RAD51CO43502 376 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 HOXC6P09630 235 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 NOP14P78316 857 aaKnown RBP11.45□□□□□ -0.58
CLIP1-210ENST00000538120 AMHR2Q16671 573 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 FAM110CQ1W6H9 321 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 NAA35Q5VZE5 725 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 KDM7AQ6ZMT4 941 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 PLEKHH3Q7Z736 793 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 DPP9Q86TI2 863 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 OR2W6PQ8NHA6 318 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms