RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CHADLQ6NUI6 762 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 RHBDF2Q6PJF5 856 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 SUGP1Q8IWZ8 645 aaKnown RBP13.98□□□□□ -0.17
LDLR-203ENST00000535915 DNERQ8NFT8 737 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 KLRG1Q96E93 195 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 VCPIP1Q96JH7 1222 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 PRMT1Q99873 361 aaKnown RBP13.98□□□□□ -0.17
LDLR-203ENST00000535915 ANAPC5Q9UJX4 755 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 SCINQ9Y6U3 715 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 CD58P19256 250 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 IVDP26440 423 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 NCOA4Q13772 614 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 ZNF568Q3ZCX4 644 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 PHF13Q86YI8 300 aaPredicted RBP13.98□□□□□ -0.17
LDLR-203ENST00000535915 TRAIPQ9BWF2 469 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 CXorf56Q9H5V9 222 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 HOMER3Q9NSC5 361 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 CNTNAP2Q9UHC6 1331 aa13.98□□□□□ -0.17
LDLR-203ENST00000535915 GJB6O95452 261 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 ACTN3Q08043 901 aaPredicted RBP13.97□□□□□ -0.17
LDLR-203ENST00000535915 KLF1Q13351 362 aaPredicted RBP13.97□□□□□ -0.17
LDLR-203ENST00000535915 DRP2Q13474 957 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 TNFAIP8L3Q5GJ75 292 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 PLEKHA7Q6IQ23 1121 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 MFSD5Q6N075 450 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 ZNF365Q70YC5 407 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.97□□□□□ -0.172e-6■■□□□ 12
LDLR-203ENST00000535915 KATNAL2Q8IYT4 538 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 CNPY4Q8N129 248 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 ZNF317Q96PQ6 595 aaPredicted RBP13.97□□□□□ -0.17
LDLR-203ENST00000535915 NIFKQ9BYG3 293 aaKnown RBP13.97□□□□□ -0.17
LDLR-203ENST00000535915 OSBPL8Q9BZF1 889 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 OSBPL7Q9BZF2 842 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 IMPG2Q9BZV3 1241 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 PEX10O60683 326 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 IFNAR2P48551 515 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 CAV1Q03135 178 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 CAPSQ13938 189 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 KYNUQ16719 465 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 ZFYVE27Q5T4F4 411 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 POTEAQ6S8J7 498 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 EXOC3L1Q86VI1 746 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 CCDC13Q8IYE1 715 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 PARVAQ9NVD7 372 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 AFG3L2Q9Y4W6 797 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 ADGRA2Q96PE1 1338 aa13.97□□□□□ -0.17
LDLR-203ENST00000535915 TTC4O95801 387 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 UBA1P22314 1058 aaKnown RBP13.96□□□□□ -0.17
LDLR-203ENST00000535915 RFC5P40937 340 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 ALDH5A1P51649 535 aaPredicted RBP13.96□□□□□ -0.17
LDLR-203ENST00000535915 C1QBPQ07021 282 aaKnown RBP13.96□□□□□ -0.17
LDLR-203ENST00000535915 CCNG2Q16589 344 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 SCARA3Q6AZY7 606 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 CHST13Q8NET6 341 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 FEZF2Q8TBJ5 459 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 ZNF606Q8WXB4 792 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 KCNN1Q92952 543 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 TCHPQ9BT92 498 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 TMEM134Q9H6X4 195 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 NRBP2Q9NSY0 501 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 KLHL11Q9NVR0 708 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 CNTN6Q9UQ52 1028 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 PTPRFP10586 1907 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 GSTTP1A0A1W2PQM5 241 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 FZD9O00144 591 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 HNRNPH1P31943 449 aaKnown RBP13.96□□□□□ -0.17
LDLR-203ENST00000535915 NF2P35240 595 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 SWT1Q5T5J6 900 aaKnown RBP13.96□□□□□ -0.17
LDLR-203ENST00000535915 EP400NLQ6ZTU2 488 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 GSTA5Q7RTV2 222 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 ZBTB33Q86T24 672 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 EXD1Q8NHP7 514 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 FAM212AQ96EL1 285 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 PWWP2AQ96N64 755 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 SERPINB12Q96P63 405 aa13.96□□□□□ -0.17
LDLR-203ENST00000535915 IGKV6D-21A0A0A0MT36 114 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 TTLL13PA6NNM8 815 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 ADCY3O60266 1144 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 FARP2O94887 1054 aaPredicted RBP13.95□□□□□ -0.18
LDLR-203ENST00000535915 CST3P01034 146 aaPredicted RBP13.95□□□□□ -0.18
LDLR-203ENST00000535915 VIMP08670 466 aaKnown RBP13.95□□□□□ -0.18
LDLR-203ENST00000535915 MAP2K2P36507 400 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 TNFSF9P41273 254 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 STAT5BP51692 787 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 RPL7AP62424 266 aaKnown RBP13.95□□□□□ -0.18
LDLR-203ENST00000535915 SF3A3Q12874 501 aaKnown RBP eCLIP13.95□□□□□ -0.189e-7■■□□□ 13.7
LDLR-203ENST00000535915 PPP1R2P3Q6NXS1 205 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 LRRC34Q8IZ02 419 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 CCDC89Q8N998 374 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 CCDC197Q8NCU1 140 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 TRPM4Q8TD43 1214 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 ARHGEF2Q92974 986 aaKnown RBP13.95□□□□□ -0.18
LDLR-203ENST00000535915 PCYT2Q99447 389 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 MAF1Q9H063 256 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 ACTR5Q9H9F9 607 aaPredicted RBP13.95□□□□□ -0.18
LDLR-203ENST00000535915 GGA3Q9NZ52 723 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 IP6K2Q9UHH9 426 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 MGAMO43451 1857 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 ATP2C2O75185 946 aa13.95□□□□□ -0.18
LDLR-203ENST00000535915 CETN2P41208 172 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms