RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SPATA31D3P0C874 917 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 OR1D2P34982 312 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 CASP4P49662 377 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 SMAD2Q15796 467 aaKnown RBP21.45■■□□□ 1.02
CPSF1-209ENST00000532725 DSTYKQ6XUX3 929 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 SPATA31D4Q6ZUB0 917 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 WDR49Q8IV35 697 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 CSGALNACT2Q8N6G5 542 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 C12orf76Q8N812 135 aaPredicted RBP21.45■■□□□ 1.02
CPSF1-209ENST00000532725 HDAC7Q8WUI4 952 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 SUSD6Q92537 303 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 CCDC127Q96BQ5 260 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 SENP8Q96LD8 212 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 APOL5Q9BWW9 433 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 MTMR12Q9C0I1 747 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 ADAM7Q9H2U9 754 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 SIX4Q9UIU6 781 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 ITGA11Q9UKX5 1188 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 AGAP1Q9UPQ3 857 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 TIMM13Q9Y5L4 95 aaPredicted RBP21.45■■□□□ 1.02
CPSF1-209ENST00000532725 H7C4K7 107 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 ITGB3P05106 788 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 DLATP10515 647 aaKnown RBP21.44■■□□□ 1.02
CPSF1-209ENST00000532725 TYMPP19971 482 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 BMP6P22004 513 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 POLR2BP30876 1174 aaKnown RBP21.44■■□□□ 1.02
CPSF1-209ENST00000532725 TAF6P49848 677 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 ISM2Q6H9L7 571 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 CENPPQ6IPU0 288 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 SLC8B1Q6J4K2 584 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 ADSSL1Q8N142 457 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 PLEKHO2Q8TD55 490 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 ZNF516Q92618 1163 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 ANKRD36BP1Q96IX9 119 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 FNBP1Q96RU3 617 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 PLEKHA4Q9H4M7 779 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 FAM50BQ9Y247 325 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 USP15Q9Y4E8 981 aaPredicted RBP21.44■■□□□ 1.02
CPSF1-209ENST00000532725 CDY1Q9Y6F8 540 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 TCF20Q9UGU0 1960 aaKnown RBP21.44■■□□□ 1.02
CPSF1-209ENST00000532725 SCN1AP35498 2009 aa21.44■■□□□ 1.02
CPSF1-209ENST00000532725 TMEM191BP0C7N4 346 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 TNNI1P19237 187 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 CLDN10P78369 228 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 RBP5P82980 135 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 ITIH3Q06033 890 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 ADAM9Q13443 819 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 ADAMTS19Q8TE59 1207 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 PARD3BQ8TEW8 1205 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 CGRRF1Q99675 332 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 COL25A1Q9BXS0 654 aaPredicted RBP21.43■■□□□ 1.02
CPSF1-209ENST00000532725 MAN1C1Q9NR34 630 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 DPP7Q9UHL4 492 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 FBXL5Q9UKA1 691 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 NCOR1O75376 2440 aa21.43■■□□□ 1.02
CPSF1-209ENST00000532725 KPNA7A9QM74 516 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 MAPK13O15264 365 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 PAPLNO95428 1278 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 TNNC2P02585 160 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 CYP11A1P05108 521 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 NR2F2P24468 414 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 RPL13P26373 211 aaKnown RBP21.42■■□□□ 1.02
CPSF1-209ENST00000532725 PNPLA4P41247 253 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 YWHAHQ04917 246 aaPredicted RBP21.42■■□□□ 1.02
CPSF1-209ENST00000532725 MORC3Q14149 939 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 CAMK4Q16566 473 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 EDRF1Q3B7T1 1238 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 CTXN3Q4LDR2 81 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 RARS2Q5T160 578 aaKnown RBP21.42■■□□□ 1.02
CPSF1-209ENST00000532725 TRAPPC11Q7Z392 1133 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 LRRC52Q8N7C0 313 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 KREMEN2Q8NCW0 462 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 FEZF2Q8TBJ5 459 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 GBP4Q96PP9 640 aa21.42■■□□□ 1.02
CPSF1-209ENST00000532725 CYB561D2O14569 222 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 AKAP3O75969 853 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 ABLIM3O94929 683 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 CST3P01034 146 aaPredicted RBP21.41■■□□□ 1.02
CPSF1-209ENST00000532725 KRT19P08727 400 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 CD44P16070 742 aaKnown RBP21.41■■□□□ 1.02
CPSF1-209ENST00000532725 MCCD1P59942 119 aaPredicted RBP21.41■■□□□ 1.02
CPSF1-209ENST00000532725 SV2CQ496J9 727 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 CEP135Q66GS9 1140 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 CMASQ8NFW8 434 aaPredicted RBP21.41■■□□□ 1.02
CPSF1-209ENST00000532725 ZNF461Q8TAF7 563 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 ZNF560Q96MR9 790 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 NECAB3Q96P71 396 aaPredicted RBP21.41■■□□□ 1.02
CPSF1-209ENST00000532725 SFXN1Q9H9B4 322 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 KIAA1468Q9P260 1216 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 CDH22Q9UJ99 828 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 FBXW11Q9UKB1 542 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 FRMD4BQ9Y2L6 1034 aa21.41■■□□□ 1.02
CPSF1-209ENST00000532725 LRRIQ3A6PVS8 624 aaPredicted RBP21.4■■□□□ 1.02
CPSF1-209ENST00000532725 PPP1R3GB7ZBB8 358 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 ODC1P11926 461 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 PMS1P54277 932 aaKnown RBP21.4■■□□□ 1.02
CPSF1-209ENST00000532725 ROR1Q01973 937 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 ANKRD40Q6AI12 368 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 OVOS1Q6IE37 1185 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 ZNF280DQ6N043 979 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms