RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 PP2D1A8MPX8 630 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 PAPLNO95428 1278 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 ADH1CP00326 375 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 FGFR1P11362 822 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 LAMP2P13473 410 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 SFPQP23246 707 aaKnown RBP eCLIP9.35□□□□□ -0.91
SSBP3-212ENST00000528930 GLRA2P23416 452 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 HOXA11P31270 313 aaPredicted RBP9.35□□□□□ -0.91
SSBP3-212ENST00000528930 CTHP32929 405 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 PTENP60484 403 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 ATP2C1P98194 919 aaPredicted RBP9.35□□□□□ -0.91
SSBP3-212ENST00000528930 POU5F1BQ06416 359 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 MXD4Q14582 209 aaPredicted RBP9.35□□□□□ -0.91
SSBP3-212ENST00000528930 SUZ12Q15022 739 aaKnown RBP9.35□□□□□ -0.91
SSBP3-212ENST00000528930 CYP26C1Q6V0L0 522 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 LRRC55Q6ZSA7 311 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 CATSPER4Q7RTX7 472 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 SLC39A11Q8N1S5 342 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 RNF149Q8NC42 400 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 ASAP3Q8TDY4 903 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 INTS4Q96HW7 963 aaKnown RBP9.35□□□□□ -0.91
SSBP3-212ENST00000528930 CASD1Q96PB1 797 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 GPRC5CQ9NQ84 441 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 DACT1Q9NYF0 836 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 SPG21Q9NZD8 308 aa9.35□□□□□ -0.91
SSBP3-212ENST00000528930 KIF26AQ9ULI4 1882 aaPredicted RBP9.34□□□□□ -0.91
SSBP3-212ENST00000528930 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.34□□□□□ -0.91
SSBP3-212ENST00000528930 K7ELQ4 463 aaPredicted RBP9.34□□□□□ -0.91
SSBP3-212ENST00000528930 USO1O60763 962 aaKnown RBP9.34□□□□□ -0.91
SSBP3-212ENST00000528930 ZNF623O75123 536 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 SYT1P21579 422 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 CDC25AP30304 524 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 CCT6AP40227 531 aaKnown RBP9.34□□□□□ -0.91
SSBP3-212ENST00000528930 PBX3P40426 434 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 PHKA2P46019 1235 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 CCR3P51677 355 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 SCAPQ12770 1279 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 CAPSQ13938 189 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 GIT2Q14161 759 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 CLLU1OSQ5K130 101 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 HAUS3Q68CZ6 603 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 DTHD1Q6ZMT9 781 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 PPFIBP1Q86W92 1011 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 LSM14AQ8ND56 463 aaKnown RBP9.34□□□□□ -0.91
SSBP3-212ENST00000528930 FOXJ1Q92949 421 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 SNX21Q969T3 373 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 MMTAG2Q9BU76 263 aaKnown RBP9.34□□□□□ -0.91
SSBP3-212ENST00000528930 RPP25Q9BUL9 199 aaKnown RBP9.34□□□□□ -0.91
SSBP3-212ENST00000528930 EDEM2Q9BV94 578 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 NFKBIZQ9BYH8 718 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 TMEM117Q9H0C3 514 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 AGPAT5Q9NUQ2 364 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 KIAA1024Q9UPX6 916 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 PIN4Q9Y237 131 aaKnown RBP9.34□□□□□ -0.91
SSBP3-212ENST00000528930 C2CD3Q4AC94 2353 aa9.34□□□□□ -0.91
SSBP3-212ENST00000528930 COL5A1P20908 1838 aaPredicted RBP9.33□□□□□ -0.92
SSBP3-212ENST00000528930 ATG2BQ96BY7 2078 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 MEIS3P2A8K0S8 358 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 CHURC1-FNTBB4DL54 471 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 E9PMD0 336 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 CXCL14O95715 111 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 CYP11B2P19099 503 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 RAP1GAPP47736 663 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 FNTBP49356 437 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 CLCN4P51793 760 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 MBTD1Q05BQ5 628 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 ADCY1Q08828 1119 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 AMHR2Q16671 573 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 HYIQ5T013 277 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 UBXN11Q5T124 520 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 DAB2IPQ5VWQ8 1189 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 ARL6IP4Q66PJ3 421 aaKnown RBP9.33□□□□□ -0.92
SSBP3-212ENST00000528930 TWF2Q6IBS0 349 aaKnown RBP9.33□□□□□ -0.92
SSBP3-212ENST00000528930 MAEAQ7L5Y9 396 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 BRAPQ7Z569 592 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 MRPL10Q7Z7H8 261 aaKnown RBP9.33□□□□□ -0.92
SSBP3-212ENST00000528930 KCTD17Q8N5Z5 321 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 MCPH1Q8NEM0 835 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 SNX29Q8TEQ0 813 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 AUTS2Q8WXX7 1259 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 BSNDQ8WZ55 320 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 LPPQ93052 612 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 ITPKCQ96DU7 683 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 CCDC43Q96MW1 224 aaKnown RBP9.33□□□□□ -0.92
SSBP3-212ENST00000528930 MKNK1Q9BUB5 465 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 RAB34Q9BZG1 259 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 POLR3FQ9H1D9 316 aaPredicted RBP9.33□□□□□ -0.92
SSBP3-212ENST00000528930 BHMT2Q9H2M3 363 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 POLD4Q9HCU8 107 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 FAM105AQ9NUU6 356 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 DDX19AQ9NUU7 478 aaKnown RBP9.33□□□□□ -0.92
SSBP3-212ENST00000528930 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.33□□□□□ -0.924e-13■■■■■ 30.7
SSBP3-212ENST00000528930 PCDHGA5Q9Y5G8 931 aa9.33□□□□□ -0.92
SSBP3-212ENST00000528930 NOTCH4Q99466 2003 aa9.32□□□□□ -0.92
SSBP3-212ENST00000528930 VPS37CA5D8V6 355 aaPredicted RBP9.32□□□□□ -0.92
SSBP3-212ENST00000528930 ARHGEF35A5YM69 484 aa9.32□□□□□ -0.92
SSBP3-212ENST00000528930 VWA3AA6NCI4 1184 aa9.32□□□□□ -0.92
SSBP3-212ENST00000528930 C4orf47A7E2U8 309 aa9.32□□□□□ -0.92
SSBP3-212ENST00000528930 MAN1A2O60476 641 aa9.32□□□□□ -0.92
SSBP3-212ENST00000528930 TSPAN1O60635 241 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms