RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 BAG2O95816 211 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 TK1P04183 234 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 A1BGP04217 495 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 CLTBP09497 229 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 FAM200BP0CF97 657 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 ACADMP11310 421 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 BMP3P12645 472 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 PORP16435 677 aaPredicted RBP6.07□□□□□ -1.44
USP47-204ENST00000525078 TACR1P25103 407 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 GABRB3P28472 473 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 TNNT3P45378 269 aaPredicted RBP6.07□□□□□ -1.44
USP47-204ENST00000525078 EXOSC9Q06265 439 aaKnown RBP6.07□□□□□ -1.44
USP47-204ENST00000525078 EGR3Q06889 387 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 ADAM9Q13443 819 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 EIF4A2Q14240 407 aaKnown RBP6.07□□□□□ -1.44
USP47-204ENST00000525078 RASA2Q15283 850 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 ATPAF1Q5TC12 328 aaPredicted RBP6.07□□□□□ -1.44
USP47-204ENST00000525078 MAP3K21Q5TCX8 1036 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 ATG16L1Q676U5 607 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 NFRKBQ6P4R8 1299 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 TMTC3Q6ZXV5 915 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 RRAGAQ7L523 313 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 CABP7Q86V35 215 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 CREG2Q8IUH2 290 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 TMEM130Q8N3G9 435 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 OR6Y1Q8NGX8 325 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 WDR48Q8TAF3 677 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 SYTL4Q96C24 671 aaPredicted RBP6.07□□□□□ -1.44
USP47-204ENST00000525078 TBC1D31Q96DN5 1066 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 RNF125Q96EQ8 232 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 TWNKQ96RR1 684 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 UHRF1Q96T88 793 aaPredicted RBP6.07□□□□□ -1.44
USP47-204ENST00000525078 MYCBPQ99417 103 aaPredicted RBP6.07□□□□□ -1.44
USP47-204ENST00000525078 RTKNQ9BST9 563 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 KIAA1683Q9H0B3 1180 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 CHST8Q9H2A9 424 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 PABPC3Q9H361 631 aaKnown RBP6.07□□□□□ -1.44
USP47-204ENST00000525078 KCNF1Q9H3M0 494 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 SEMA6BQ9H3T3 888 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 AKTIPQ9H8T0 292 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 NOD2Q9HC29 1040 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 SLAMF7Q9NQ25 335 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 BTBD7Q9P203 1132 aa6.07□□□□□ -1.44
USP47-204ENST00000525078 SOS1Q07889 1333 aaPredicted RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 MYBBP1AQ9BQG0 1328 aaKnown RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 A0A0A6YYJ9 748 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 GTPBP1O00178 669 aaKnown RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 KRT38O76015 456 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 PRKCBP05771 671 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 NPPBP16860 134 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 PRDX5P30044 214 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 ARL3P36405 182 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 SLC6A11P48066 632 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 COPAP53621 1224 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 ZNF200P98182 395 aaPredicted RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 DBPQ10586 325 aaPredicted RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 TRIM28Q13263 835 aaKnown RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 CTBP1Q13363 440 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 HABP2Q14520 560 aaPredicted RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 TARBP2Q15633 366 aaKnown RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 GAB4Q2WGN9 574 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 CYP27C1Q4G0S4 372 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 SLC10A5Q5PT55 438 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 MICU3Q86XE3 530 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 ARMC8Q8IUR7 673 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 SLC44A2Q8IWA5 706 aaPredicted RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 RPAP2Q8IXW5 612 aaPredicted RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 YAF2Q8IY57 180 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 VGLL2Q8N8G2 317 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 SCAMP5Q8TAC9 235 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 IFI44Q8TCB0 444 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 TBC1D22AQ8WUA7 517 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 BCL7CQ8WUZ0 217 aaPredicted RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 NSUN4Q96CB9 384 aaKnown RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 JAKMIP1Q96N16 626 aaKnown RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 JMJD8Q96S16 334 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 MXD3Q9BW11 206 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 C1orf43Q9BWL3 253 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 PITHD1Q9GZP4 211 aaPredicted RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 AP5M1Q9H0R1 490 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 SYNCQ9H7C4 482 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 SMURF2Q9HAU4 748 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 HEYLQ9NQ87 328 aaPredicted RBP6.06□□□□□ -1.44
USP47-204ENST00000525078 TNFRSF10DQ9UBN6 386 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 FBLN5Q9UBX5 448 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 PCDHGB4Q9UN71 923 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 TMEM5Q9Y2B1 443 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 ZNF711Q9Y462 761 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 PAXBP1Q9Y5B6 917 aa6.06□□□□□ -1.44
USP47-204ENST00000525078 LMTK3Q96Q04 1460 aa6.05□□□□□ -1.44
USP47-204ENST00000525078 H0Y3Z8 333 aa6.05□□□□□ -1.44
USP47-204ENST00000525078 PRAMEF4O60810 478 aa6.05□□□□□ -1.44
USP47-204ENST00000525078 PHF2O75151 1096 aa6.05□□□□□ -1.44
USP47-204ENST00000525078 TBCAO75347 108 aaKnown RBP6.05□□□□□ -1.44
USP47-204ENST00000525078 TSPAN9O75954 239 aa6.05□□□□□ -1.44
USP47-204ENST00000525078 SCGB1D1O95968 90 aa6.05□□□□□ -1.44
USP47-204ENST00000525078 PROCP04070 461 aa6.05□□□□□ -1.44
USP47-204ENST00000525078 ANXA1P04083 346 aa6.05□□□□□ -1.44
USP47-204ENST00000525078 HSPA1AP0DMV8 641 aaKnown RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms