RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TRIM42Q8IWZ5 723 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 ABI1Q8IZP0 508 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 CCNYL1Q8N7R7 359 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 SLC5A5Q92911 643 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 TNFRSF25Q93038 417 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 FAM163AQ96GL9 167 aaPredicted RBP12.33□□□□□ -0.43
SYNPO-204ENST00000519664 C2orf40Q9H1Z8 148 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 TAS2R14Q9NYV8 317 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 HAUS5O94927 633 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 GJB6O95452 261 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 FDX1P10109 184 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 CDR2Q01850 454 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 THOC5Q13769 683 aaKnown RBP12.33□□□□□ -0.44
SYNPO-204ENST00000519664 STAT4Q14765 748 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 ACAD10Q6JQN1 1059 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 RAPGEF5Q92565 580 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 ERP27Q96DN0 273 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 PDCD2LQ9BRP1 358 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 LCMT1Q9UIC8 334 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 MEIS2O14770 477 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 TRPA1O75762 1119 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 HSPA4LO95757 839 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 OATP04181 439 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 CLCN3P51790 818 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 DLG4P78352 724 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 KDSRQ06136 332 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 CACNB2Q08289 660 aaPredicted RBP12.33□□□□□ -0.44
SYNPO-204ENST00000519664 DRP2Q13474 957 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 GRAMD1BQ3KR37 738 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 GLRA4Q5JXX5 417 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 MOXD1Q6UVY6 613 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 LRIG3Q6UXM1 1119 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 APOBEC3FQ8IUX4 373 aaKnown RBP12.33□□□□□ -0.44
SYNPO-204ENST00000519664 EMC1Q8N766 993 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 FAM71DQ8N9W8 422 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 DTX3LQ8TDB6 740 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 TRAF3IP3Q9Y228 551 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 NUMBP49757 651 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 POLE2P56282 527 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 NLRP11P59045 1033 aaKnown RBP12.33□□□□□ -0.44
SYNPO-204ENST00000519664 R3HDM1Q15032 1099 aaKnown RBP12.33□□□□□ -0.44
SYNPO-204ENST00000519664 PDCD2Q16342 344 aaPredicted RBP12.33□□□□□ -0.44
SYNPO-204ENST00000519664 SGSM1Q2NKQ1 1148 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 KLHL38Q2WGJ6 581 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 RNF139Q8WU17 664 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.33□□□□□ -0.44
SYNPO-204ENST00000519664 MED15Q96RN5 788 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 OLFML3Q9NRN5 406 aa12.33□□□□□ -0.44
SYNPO-204ENST00000519664 VCAM1P19320 739 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 TCF7P36402 384 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-204ENST00000519664 ATG16L1Q676U5 607 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 EFCAB12Q6NXP0 572 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 RCOR2Q8IZ40 523 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 C4orf32Q8N8J7 132 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 PRPF31Q8WWY3 499 aaKnown RBP12.32□□□□□ -0.44
SYNPO-204ENST00000519664 KRT35Q92764 455 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 ACAP3Q96P50 834 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 ANKEF1Q9NU02 776 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 FAM198AQ9UFP1 575 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 SLC12A3P55017 1021 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 POU5F1BQ06416 359 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 Q4G0T1 1027 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 TRMT10CQ7L0Y3 403 aaKnown RBP12.32□□□□□ -0.44
SYNPO-204ENST00000519664 RNF135Q8IUD6 432 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 FEZF2Q8TBJ5 459 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 ZNF384Q8TF68 577 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 DDX27Q96GQ7 796 aaKnown RBP12.32□□□□□ -0.44
SYNPO-204ENST00000519664 FAM161BQ96MY7 647 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 USP15Q9Y4E8 981 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-204ENST00000519664 USH1CQ9Y6N9 552 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 DYNC1LI2O43237 492 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-204ENST00000519664 EXTL3O43909 919 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 PYGMP11217 842 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 TYK2P29597 1187 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 OVGP1Q12889 678 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 SLC15A2Q16348 729 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 DACT2Q5SW24 774 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 JADE1Q6IE81 842 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 METTL23Q86XA0 190 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 BEST2Q8NFU1 509 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 DGKZQ13574 1117 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 TRPM8Q7Z2W7 1104 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 ZBTB45Q96K62 511 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-204ENST00000519664 UBN1Q9NPG3 1134 aa12.32□□□□□ -0.44
SYNPO-204ENST00000519664 PIN4Q9Y237 131 aaKnown RBP12.32□□□□□ -0.44
SYNPO-204ENST00000519664 TNFAIP2Q03169 654 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 NR1H3Q13133 447 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 CUL2Q13617 745 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 TSTA3Q13630 321 aaPredicted RBP12.31□□□□□ -0.44
SYNPO-204ENST00000519664 ATF7IP2Q5U623 682 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 STYK1Q6J9G0 422 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 RSPH3Q86UC2 560 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 XPO7Q9UIA9 1087 aaKnown RBP12.31□□□□□ -0.44
SYNPO-204ENST00000519664 ARL2BPQ9Y2Y0 163 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 DCCP43146 1447 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 PIP4K2CQ8TBX8 421 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 ACTRT1Q8TDG2 376 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 RUBCNQ92622 972 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 NUDCD1Q96RS6 583 aa12.31□□□□□ -0.44
SYNPO-204ENST00000519664 TMEM121Q9BTD3 319 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms