RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 PBX3P40426 434 aa22.55■■□□□ 1.2
LSM6-207ENST00000515311 NOP14P78316 857 aaKnown RBP22.55■■□□□ 1.2
LSM6-207ENST00000515311 LRIT3Q3SXY7 679 aa22.55■■□□□ 1.2
LSM6-207ENST00000515311 TRIM65Q6PJ69 517 aa22.55■■□□□ 1.2
LSM6-207ENST00000515311 IGSF21Q96ID5 467 aa22.55■■□□□ 1.2
LSM6-207ENST00000515311 PLVAPQ9BX97 442 aa22.55■■□□□ 1.2
LSM6-207ENST00000515311 COLQQ9Y215 455 aaPredicted RBP22.55■■□□□ 1.2
LSM6-207ENST00000515311 F8W810 466 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 SPTLC1O15269 473 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 TEX33O43247 280 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 TRAPPC3O43617 180 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 TADA2AO75478 443 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 P4HA1P13674 534 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 IGFBP6P24592 240 aaPredicted RBP22.54■■□□□ 1.2
LSM6-207ENST00000515311 BMPR1AP36894 532 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 TAP1Q03518 808 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 KCNMA1Q12791 1236 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 SYCP1Q15431 976 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 TMEM173Q86WV6 379 aaPredicted RBP22.54■■□□□ 1.2
LSM6-207ENST00000515311 PI4K2AQ9BTU6 479 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 SIK3Q9Y2K2 1263 aa22.54■■□□□ 1.2
LSM6-207ENST00000515311 SF3B1O75533 1304 aaKnown RBP eCLIP22.54■■□□□ 1.28e-6■■■■■ 107
LSM6-207ENST00000515311 TSC2P49815 1807 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 ARHGEF37A1IGU5 675 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 NT5C1B-RDH14C9J2C7 533 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 C5orf67F2Z3F1 127 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 AP5Z1O43299 807 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 LRRN2O75325 713 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 EFEMP2O95967 443 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 SLC9A1P19634 815 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 PLCB2Q00722 1185 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 ELAVL2Q12926 359 aaKnown RBP22.53■■□□□ 1.2
LSM6-207ENST00000515311 WDR72Q3MJ13 1102 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 ZNF667Q5HYK9 610 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 HASPINQ8TF76 798 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 BCL7CQ8WUZ0 217 aaPredicted RBP22.53■■□□□ 1.2
LSM6-207ENST00000515311 TMEM169Q96HH4 297 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 SUSD3Q96L08 255 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 NT5C1BQ96P26 610 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 TGS1Q96RS0 853 aaKnown RBP22.53■■□□□ 1.2
LSM6-207ENST00000515311 TRIM5Q9C035 493 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 NIF3L1Q9GZT8 377 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 PLCB1Q9NQ66 1216 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 STK39Q9UEW8 545 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 CHD9Q3L8U1 2897 aa22.53■■□□□ 1.2
LSM6-207ENST00000515311 PLXNA4Q9HCM2 1894 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 M0QZQ0 153 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 CLSTN1O94985 981 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 ARHGEF15O94989 841 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 RB1P06400 928 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 DNAJB2P25686 324 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 CTNNB1P35222 781 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 PBX1P40424 430 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 ERVK-21P61565 698 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 TNNC1P63316 161 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 GSE1Q14687 1217 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 TIGD5Q53EQ6 642 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 SPOPLQ6IQ16 392 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 NKX2-4Q9H2Z4 354 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 GRPEL1Q9HAV7 217 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 APOBEC3GQ9HC16 384 aaKnown RBP22.52■■□□□ 1.2
LSM6-207ENST00000515311 SIX2Q9NPC8 291 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 APEX2Q9UBZ4 518 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 SNX9Q9Y5X1 595 aa22.52■■□□□ 1.2
LSM6-207ENST00000515311 PLCB3Q01970 1234 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 PPP2R2DQ66LE6 453 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 DPY19L2P1Q6NXN4 242 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 FUT10Q6P4F1 479 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 DSTYKQ6XUX3 929 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 DPH6Q7L8W6 267 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 LIMS2Q7Z4I7 341 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 SENP8Q96LD8 212 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 FAM81BQ96LP2 452 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 C17orf80Q9BSJ5 609 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 FAM124BQ9H5Z6 455 aaPredicted RBP22.51■■□□□ 1.19
LSM6-207ENST00000515311 SLC28A3Q9HAS3 691 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 NXF1Q9UBU9 619 aaKnown RBP22.51■■□□□ 1.19
LSM6-207ENST00000515311 DAAM1Q9Y4D1 1078 aa22.51■■□□□ 1.19
LSM6-207ENST00000515311 LAMA3Q16787 3333 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 CYB561D2O14569 222 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 FGF18O76093 207 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 ODC1P11926 461 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 RFX1P22670 979 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 TBXAS1P24557 533 aaPredicted RBP22.5■■□□□ 1.19
LSM6-207ENST00000515311 ASPAP45381 313 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 BRCC3P46736 316 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 GCNT1Q02742 428 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 KRT17Q04695 432 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 DDX53Q86TM3 631 aaKnown RBP22.5■■□□□ 1.19
LSM6-207ENST00000515311 RNF168Q8IYW5 571 aaPredicted RBP22.5■■□□□ 1.19
LSM6-207ENST00000515311 TOP6BLQ8N6T0 577 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 KLHL23Q8NBE8 558 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 TATDN2Q93075 761 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 TIFAQ96CG3 184 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 C11orf84Q9BUA3 381 aaPredicted RBP22.5■■□□□ 1.19
LSM6-207ENST00000515311 LSM14BQ9BX40 385 aaKnown RBP22.5■■□□□ 1.19
LSM6-207ENST00000515311 BCO2Q9BYV7 579 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.5■■□□□ 1.19
LSM6-207ENST00000515311 DSEQ9UL01 958 aa22.5■■□□□ 1.19
LSM6-207ENST00000515311 PCDHB8Q9UN66 801 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms