RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 MTMR10Q9NXD2 777 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 ARMCX3Q9UH62 379 aaPredicted RBP10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 PCDHB8Q9UN66 801 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 NFE2L3Q9Y4A8 694 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 PRUNE2Q8WUY3 3088 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 MYO7AQ13402 2215 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 PLXNA3P51805 1871 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 MAPK13O15264 365 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 VNN1O95497 513 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 EFEMP2O95967 443 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 CST3P01034 146 aaPredicted RBP10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 C4BPAP04003 597 aaKnown RBP10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 SOD2P04179 222 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 URODP06132 367 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 FOSL2P15408 326 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 RPL17P18621 184 aaKnown RBP10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 MXI1P50539 228 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 CDR1P51861 262 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 MYL6P60660 151 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 KRT17Q04695 432 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 SPOPLQ6IQ16 392 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 FOXR2Q6PJQ5 311 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 DSTYKQ6XUX3 929 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 SCARA5Q6ZMJ2 495 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 SV2AQ7L0J3 742 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 TMC7Q7Z402 723 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 FILIP1Q7Z7B0 1213 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 DDX53Q86TM3 631 aaKnown RBP10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 NT5DC4Q86YG4 428 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 GLYCTKQ8IVS8 523 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 TRIM59Q8IWR1 403 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 RNF168Q8IYW5 571 aaPredicted RBP10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 MICAL1Q8TDZ2 1067 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 TAS1R2Q8TE23 839 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 CACTINQ8WUQ7 758 aaKnown RBP10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 PPM1EQ8WY54 764 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 RIN2Q8WYP3 895 aaPredicted RBP10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 SLC35C1Q96A29 364 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 MRPL38Q96DV4 380 aaKnown RBP10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 DDX27Q96GQ7 796 aaKnown RBP10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 ZNF560Q96MR9 790 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 GAS2L1Q99501 681 aaPredicted RBP10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 TAB2Q9NYJ8 693 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 ITGA11Q9UKX5 1188 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 POLIQ9UNA4 740 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 MTCH2Q9Y6C9 303 aa10.56□□□□□ -0.72
TOPBP1-209ENST00000513818 FSCN2O14926 492 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 PER2O15055 1255 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 HCRTO43612 131 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 LETM1O95202 739 aaPredicted RBP10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 HLA-DRAP01903 254 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 CTSAP10619 480 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 GTF2F1P35269 517 aaKnown RBP eCLIP10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 TIE1P35590 1138 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 MTIF2P46199 727 aaKnown RBP10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 RAP1GAPP47736 663 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 GLUD2P49448 558 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 AARSP49588 968 aaKnown RBP eCLIP10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 TAF6P49848 677 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 LILRA4P59901 499 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 CLDN10P78369 228 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 RBP5P82980 135 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 RBM10P98175 930 aaKnown RBP10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 MYL7Q01449 175 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 MYL5Q02045 173 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 UBE3AQ05086 875 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 TRPC3Q13507 836 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 NCOA4Q13772 614 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 NCAPHQ15003 741 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 PTPN14Q15678 1187 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 CCDC85BQ15834 202 aaPredicted RBP10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 ZACNQ401N2 412 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 SV2CQ496J9 727 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 TCEAL5Q5H9L2 206 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 TMCO4Q5TGY1 634 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 GPR153Q6NV75 609 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 C15orf39Q6ZRI6 1047 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 FRMD5Q7Z6J6 570 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 RBM23Q86U06 439 aaKnown RBP10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 DHX40Q8IX18 779 aaKnown RBP10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 ENOX1Q8TC92 643 aaKnown RBP10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 SEMA4DQ92854 862 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 HPDLQ96IR7 371 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 SENP8Q96LD8 212 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 TSPAN18Q96SJ8 248 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 THAP9Q9H5L6 903 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 CBX8Q9HC52 389 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 FANCLQ9NW38 375 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 PUF60Q9UHX1 559 aaKnown RBP10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 SNX9Q9Y5X1 595 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 PRRC2BQ5JSZ5 2229 aaKnown RBP10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 COL6A3P12111 3177 aa10.55□□□□□ -0.72
TOPBP1-209ENST00000513818 XIRP2A4UGR9 3374 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 KCNJ18B7U540 433 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 CYB561D2O14569 222 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 ADAM12O43184 909 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 FGFR1OPO95684 399 aaKnown RBP10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 CXCL14O95715 111 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 GNA14O95837 355 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms