RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 JADE1Q6IE81 842 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 CCDC70Q6NSX1 233 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 CYP4F22Q6NT55 531 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 TMEM270Q6UE05 265 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 ALKAL1Q6UXT8 129 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 RUFY4Q6ZNE9 571 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 CATSPER4Q7RTX7 472 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 DAAM2Q86T65 1068 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 TMEM192Q8IY95 271 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 MCOLN2Q8IZK6 566 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 C7orf31Q8N865 590 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 C1orf127Q8N9H9 656 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 KLHDC9Q8NEP7 349 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 CAGE1Q8TC20 777 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 DNAJB3Q8WWF6 145 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 ZNF606Q8WXB4 792 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 FAM212AQ96EL1 285 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 CPB2Q96IY4 423 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 FAM84AQ96KN4 292 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 CAPZA3Q96KX2 299 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 SCLT1Q96NL6 688 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 CARD9Q9H257 536 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 PDCL3Q9H2J4 239 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 OSGEPQ9NPF4 335 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 ACP6Q9NPH0 428 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 CISHQ9NSE2 258 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 CTTNBP2NLQ9P2B4 639 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 GTF2IRD1Q9UHL9 959 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 GABRQQ9UN88 632 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.94□□□□□ -0.98
RNF4-220ENST00000513578 UMODL1Q5DID0 1318 aa8.94□□□□□ -0.98
RNF4-220ENST00000513578 SCN1AP35498 2009 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 CCDC188H7C350 402 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 RRP9O43818 475 aaKnown RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 ERLIN1O75477 346 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 CSDE1O75534 798 aaKnown RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 TFRCP02786 760 aaKnown RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 NFICP08651 508 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 RARBP10826 455 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 HOXD10P28358 340 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 TNFRSF8P28908 595 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 SLC1A1P43005 524 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 NSFP46459 744 aaKnown RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 CTCFP49711 727 aaPredicted RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 OSTNP61366 133 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 RBP5P82980 135 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 PTPN11Q06124 597 aaPredicted RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 PTP4A2Q12974 167 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 PPP2R5EQ16537 467 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 DEFB115Q30KQ5 88 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 MAP3K21Q5TCX8 1036 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 LIN9Q5TKA1 542 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 CCSAPQ6IQ19 270 aaPredicted RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 TMCO3Q6UWJ1 677 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 MON1BQ7L1V2 547 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 CDR2LQ86X02 465 aaPredicted RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 DNAAF5Q86Y56 855 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 USP38Q8NB14 1042 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 CD101Q93033 1021 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 LENG1Q96BZ8 264 aaPredicted RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 ZNF653Q96CK0 615 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 CAPNS2Q96L46 248 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 SNX27Q96L92 541 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 CELF4Q9BZC1 486 aaKnown RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 ARHGAP39Q9C0H5 1083 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 FAM49AQ9H0Q0 323 aaPredicted RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 WNT8AQ9H1J5 351 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 LHX5Q9H2C1 402 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 CDHR5Q9HBB8 845 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 MRPL47Q9HD33 250 aaKnown RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.93□□□□□ -0.98
RNF4-220ENST00000513578 CREBZFQ9NS37 354 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 DPP3Q9NY33 737 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 FAM53CQ9NYF3 392 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 CNTN3Q9P232 1028 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 CNOT8Q9UFF9 292 aaKnown RBP8.93□□□□□ -0.98
RNF4-220ENST00000513578 KIAA1257Q9ULG3 409 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 ALG6Q9Y672 507 aa8.93□□□□□ -0.98
RNF4-220ENST00000513578 MYADML2A6NDP7 307 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 KCNK3O14649 394 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 THAP12O43422 761 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 MED7O43513 233 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 XPOTO43592 962 aaKnown RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 CABYRO75952 493 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 NPTXRO95502 500 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 TBC1D8O95759 1140 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 ITGB3P05106 788 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 FAM163BP0C2L3 166 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 C6orf222P0C671 652 aaPredicted RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 KCNE1P15382 129 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 CYP3A5P20815 502 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 MMP8P22894 467 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 CXCR5P32302 372 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 MAP2K2P36507 400 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 PEX5P50542 639 aa8.92□□□□□ -0.98
RNF4-220ENST00000513578 YARSP54577 528 aaKnown RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 GSCP56915 257 aaPredicted RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 IRX5P78411 483 aaPredicted RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 MRPS6P82932 125 aaKnown RBP8.92□□□□□ -0.98
RNF4-220ENST00000513578 PRKCZQ05513 592 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms