RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 STIM1Q13586 685 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 DUOXA2Q1HG44 320 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 VARS2Q5ST30 1063 aaKnown RBP19.62■□□□□ 0.73
NPHP4-210ENST00000506941 KLHL10Q6JEL2 608 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 RSPO2Q6UXX9 243 aaPredicted RBP19.62■□□□□ 0.73
NPHP4-210ENST00000506941 GLYCTKQ8IVS8 523 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 CSGALNACT2Q8N6G5 542 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 BORCS6Q96GS4 357 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 CLSTN3Q9BQT9 956 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.62■□□□□ 0.73
NPHP4-210ENST00000506941 PCDHB8Q9UN66 801 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 AGAP1Q9UPQ3 857 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 CTNND2Q9UQB3 1225 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 FRMD4BQ9Y2L6 1034 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 DENND4AQ7Z401 1863 aa19.62■□□□□ 0.73
NPHP4-210ENST00000506941 FSD2A1L4K1 749 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 H3BQ06 376 aaPredicted RBP19.61■□□□□ 0.73
NPHP4-210ENST00000506941 TNNC2P02585 160 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 KLRC2P26717 231 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 NDUFV1P49821 464 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 TAF6P49848 677 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 LRRC63Q05C16 580 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 C1orf220Q5T0J3 134 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 TMEM184AQ6ZMB5 413 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 TRAPPC11Q7Z392 1133 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 FAM186BQ8IYM0 893 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 NELFBQ8WX92 580 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 MSLNLQ96KJ4 702 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 SENP8Q96LD8 212 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 TSG101Q99816 390 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 DUSP9Q99956 384 aaKnown RBP19.61■□□□□ 0.73
NPHP4-210ENST00000506941 MTRRQ9UBK8 725 aa19.61■□□□□ 0.73
NPHP4-210ENST00000506941 TIMM13Q9Y5L4 95 aaPredicted RBP19.61■□□□□ 0.73
NPHP4-210ENST00000506941 TBC1D4O60343 1298 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 ADH1AP07327 375 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 KRT19P08727 400 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 PPP1R2P41236 205 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 CREMQ03060 361 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 MRPL58Q14197 206 aaKnown RBP19.6■□□□□ 0.73
NPHP4-210ENST00000506941 CLUL1Q15846 466 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 TTI2Q6NXR4 508 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 PDXDC1Q6P996 788 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 DSTYKQ6XUX3 929 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 ANKS3Q6ZW76 656 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.6■□□□□ 0.73
NPHP4-210ENST00000506941 TMC2Q8TDI7 906 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 ZNF560Q96MR9 790 aa19.6■□□□□ 0.73
NPHP4-210ENST00000506941 CETN3O15182 167 aa19.59■□□□□ 0.73
NPHP4-210ENST00000506941 MBD3O95983 291 aa19.59■□□□□ 0.73
NPHP4-210ENST00000506941 PSMC2P35998 433 aaKnown RBP19.59■□□□□ 0.73
NPHP4-210ENST00000506941 RBP5P82980 135 aa19.59■□□□□ 0.73
NPHP4-210ENST00000506941 SV2CQ496J9 727 aa19.59■□□□□ 0.73
NPHP4-210ENST00000506941 TDRD10Q5VZ19 366 aaKnown RBP19.59■□□□□ 0.73
NPHP4-210ENST00000506941 RBM43Q6ZSC3 357 aaKnown RBP19.59■□□□□ 0.73
NPHP4-210ENST00000506941 PPFIBP1Q86W92 1011 aa19.59■□□□□ 0.73
NPHP4-210ENST00000506941 PALB2Q86YC2 1186 aa19.59■□□□□ 0.73
NPHP4-210ENST00000506941 LRRC52Q8N7C0 313 aa19.59■□□□□ 0.73
NPHP4-210ENST00000506941 MKNK1Q9BUB5 465 aa19.59■□□□□ 0.73
NPHP4-210ENST00000506941 BACE2Q9Y5Z0 518 aa19.59■□□□□ 0.73
NPHP4-210ENST00000506941 CDY1Q9Y6F8 540 aa19.59■□□□□ 0.73
NPHP4-210ENST00000506941 PTPRDP23468 1912 aa19.59■□□□□ 0.73
NPHP4-210ENST00000506941 KPNA7A9QM74 516 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 TGM5O43548 720 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 CST3P01034 146 aaPredicted RBP19.58■□□□□ 0.72
NPHP4-210ENST00000506941 SPATA31D3P0C874 917 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 TRIM49P0CI25 452 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 TRIM49CP0CI26 452 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 ODC1P11926 461 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 PAX3P23760 479 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 OR1D2P34982 312 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 PNPLA4P41247 253 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 KCNQ1P51787 676 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 VAMP7P51809 220 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 STX17P56962 302 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 MCCD1P59942 119 aaPredicted RBP19.58■□□□□ 0.72
NPHP4-210ENST00000506941 FKBP3Q00688 224 aaKnown RBP19.58■□□□□ 0.72
NPHP4-210ENST00000506941 BFSP1Q12934 665 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 PAK1Q13153 545 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 LEXMQ3ZCV2 418 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 ANKRD54Q6NXT1 300 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 LILRA6Q6PI73 481 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 SPATA31D4Q6ZUB0 917 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 INTS8Q75QN2 995 aaKnown RBP19.58■□□□□ 0.72
NPHP4-210ENST00000506941 APPL2Q8NEU8 664 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.58■□□□□ 0.72
NPHP4-210ENST00000506941 FEZF2Q8TBJ5 459 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 CASP10Q92851 521 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 MED15Q96RN5 788 aa19.58■□□□□ 0.72
NPHP4-210ENST00000506941 CYB561D2O14569 222 aa19.57■□□□□ 0.72
NPHP4-210ENST00000506941 OAZ2O95190 189 aa19.57■□□□□ 0.72
NPHP4-210ENST00000506941 GLUD1P00367 558 aa19.57■□□□□ 0.72
NPHP4-210ENST00000506941 C4BPAP04003 597 aaKnown RBP19.57■□□□□ 0.72
NPHP4-210ENST00000506941 CYP11A1P05108 521 aa19.57■□□□□ 0.72
NPHP4-210ENST00000506941 TYMPP19971 482 aa19.57■□□□□ 0.72
NPHP4-210ENST00000506941 DPCR1Q3MIW9 517 aa19.57■□□□□ 0.72
NPHP4-210ENST00000506941 SYCE2Q6PIF2 218 aa19.57■□□□□ 0.72
NPHP4-210ENST00000506941 FOXR2Q6PJQ5 311 aa19.57■□□□□ 0.72
NPHP4-210ENST00000506941 ATXN2LQ8WWM7 1075 aaKnown RBP19.57■□□□□ 0.72
NPHP4-210ENST00000506941 HPDLQ96IR7 371 aa19.57■□□□□ 0.72
NPHP4-210ENST00000506941 MAN1C1Q9NR34 630 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms