RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CCDC68Q9H2F9 335 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 SMYD2Q9NRG4 433 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 FAM47DPA6NHR8 397 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 AMPD2Q01433 879 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 NT5DC3Q86UY8 548 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 ETNPPLQ8TBG4 499 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 ASTN1O14525 1302 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 H3BRJ5 948 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 HAUS5O94927 633 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 GH1P01241 217 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 TAF11Q15544 211 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 ANKMY2Q8IV38 441 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 KCTD10Q9H3F6 313 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 PLIN4Q96Q06 1357 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 CFAP69A5D8W1 941 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 RARGP13631 454 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 MX2P20592 715 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 CASP5P51878 434 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 OAZ1P54368 228 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 BMT2Q1RMZ1 405 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 ZC3H18Q86VM9 953 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 TAS1R2Q8TE23 839 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 DHX35Q9H5Z1 703 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 RSAD1Q9HA92 442 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 TMEM120BA0PK00 339 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 EPHB6O15197 1021 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 ADORA2BP29275 332 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 SEC24CP53992 1094 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 EFHC2Q5JST6 749 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 BTNL9Q6UXG8 535 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 HDAC7Q8WUI4 952 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 C9orf72Q96LT7 481 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 ZNF518BQ9C0D4 1074 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 SCAF8Q9UPN6 1271 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 SPECC1L-ADORA2AF8WAN1 911 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 GYG2O15488 501 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 SPAG6O75602 509 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 ABL1P00519 1130 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 TFRCP02786 760 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 ARFIP2P53365 341 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 KYNUQ16719 465 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 RAB44Q7Z6P3 723 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 ARHGEF19Q8IW93 802 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 ZKSCAN4Q969J2 545 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 TNIP3Q96KP6 325 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 ERAP1Q9NZ08 941 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 RNF181Q9P0P0 153 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 REXO2Q9Y3B8 237 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 GOLGA8CPA6NN73 597 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 HNRNPCL1O60812 293 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 GSTA1P08263 222 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 GSTA2P09210 222 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 PDGFRAP16234 1089 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 BRD2P25440 801 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 TWF2Q6IBS0 349 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 EFCAB12Q6NXP0 572 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 XPO7Q9UIA9 1087 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 PPME1Q9Y570 386 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 RCCD1A6NED2 376 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 TRIM66O15016 1216 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 OGTO15294 1046 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 PAMP19021 973 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 MMEL1Q495T6 779 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 TAF1BQ53T94 588 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 SPDYCQ5MJ68 293 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 RNF139Q8WU17 664 aa11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 POP1Q99575 1024 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-205ENST00000503057 KCNN4O15554 427 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 MAP3K7O43318 606 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 GPC4O75487 556 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 SH3BGRP55822 239 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 NPY5RQ15761 445 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 TATDN1Q6P1N9 297 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 C1orf131Q8NDD1 294 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 DNERQ8NFT8 737 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 SLIT2O94813 1529 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 LSM8O95777 96 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 WEE2P0C1S8 567 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 TGFB2P61812 414 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 PTF1AQ7RTS3 328 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 WDR49Q8IV35 697 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 PPIL6Q8IXY8 311 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 THEM5Q8N1Q8 247 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 MYCBPAPQ8TBZ2 947 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 ETNK1Q9HBU6 452 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 PFDN4Q9NQP4 134 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 LRRC4BQ9NT99 713 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 PPARGC1AQ9UBK2 798 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 PPP2R3BQ9Y5P8 575 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 KPNA7A9QM74 516 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 PROSCO94903 275 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 GCNT1Q02742 428 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 PLCB4Q15147 1175 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 ECM1Q16610 540 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 CBWD6Q4V339 395 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 CBWD3Q5JTY5 395 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 CBWD5Q5RIA9 395 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 SPOPLQ6IQ16 392 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 SV2AQ7L0J3 742 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 LRRC71Q8N4P6 559 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms