RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 C4BPAP04003 597 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 PSMC4P43686 418 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 GCNT1Q02742 428 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 KRT17Q04695 432 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 RNASELQ05823 741 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 STXBP2Q15833 593 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 ZACNQ401N2 412 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 SGO2Q562F6 1265 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 C15orf39Q6ZRI6 1047 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 SRRM1Q8IYB3 904 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 ACSF2Q96CM8 615 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 BTBD7Q9P203 1132 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 UVRAGQ9P2Y5 699 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 NUB1Q9Y5A7 615 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 DNAH12Q6ZR08 3092 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 FDX1P10109 184 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 CLNS1AP54105 237 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 USP37Q86T82 979 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 PCYOX1Q9UHG3 505 aa17.57■□□□□ 0.4
CCDC88B-210ENST00000494566 SSC5DA1L4H1 1573 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 CD58P19256 250 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 UBA1P22314 1058 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 NSFP46459 744 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 MPP2Q14168 576 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 LY6KQ17RY6 165 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 PAXIP1Q6ZW49 1069 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 SPOCK2Q92563 424 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 PCYT2Q99447 389 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 ACTR5Q9H9F9 607 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 SLC24A3Q9HC58 644 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 GINM1Q9NU53 330 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 MTUS1Q9ULD2 1270 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 AFG3L2Q9Y4W6 797 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 NFASCO94856 1347 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 ATP6V1G2O95670 118 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 CALCOCO2Q13137 446 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 PSMD6Q15008 389 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 TCEAL1Q15170 157 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 KAZNQ674X7 775 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 TRPM8Q7Z2W7 1104 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 NCAPG2Q86XI2 1143 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 SLC7A3Q8WY07 619 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 HAUS1Q96CS2 278 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 PORCNQ9H237 461 aa17.56■□□□□ 0.4
CCDC88B-210ENST00000494566 GSTTP1A0A1W2PQM5 241 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 CST3P01034 146 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 GJB1P08034 283 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 TCF4P15884 667 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 GTF2H1P32780 548 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 MMP13P45452 471 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 ATP13A4Q4VNC1 1196 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 ANKS1BQ7Z6G8 1248 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 LRRC71Q8N4P6 559 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 NLGN2Q8NFZ4 835 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 CDHR1Q96JP9 859 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 C12orf42Q96LP6 360 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 CEP83Q9Y592 693 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 DKC1O60832 514 aaKnown RBP eCLIP17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 SRGAP2CP0DJJ0 459 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 ACO1P21399 889 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 GNA15P30679 374 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 ELF1P32519 619 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 TAS2R40P59535 323 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 OSTNP61366 133 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 CAPSQ13938 189 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 NEDD9Q14511 834 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 TCHPQ9BT92 498 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 YY1AP1Q9H869 796 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 ECT2Q9H8V3 914 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 HOXC10Q9NYD6 342 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 PCDHB2Q9Y5E7 798 aa17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 MAFBQ9Y5Q3 323 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-210ENST00000494566 C19orf81C9J6K1 198 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 IGF2BP3O00425 579 aaKnown RBP eCLIP17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 THAP12O43422 761 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 ECEL1O95672 775 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 MYBL1P10243 752 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 CETPP11597 493 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 OAZ1P54368 228 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 CUL2Q13617 745 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 VGLL4Q14135 290 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 CNGA2Q16280 664 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 PPP2R5EQ16537 467 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 TMEM63BQ5T3F8 832 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 DHX33Q9H6R0 707 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 SUFUQ9UMX1 484 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 PI4K2BG5E9Z4 385 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 PGK2P07205 417 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 EZRP15311 586 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 ADCY8P40145 1251 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 ALDH5A1P51649 535 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 GSCP56915 257 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 SCARA5Q6ZMJ2 495 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 KIF9Q9HAQ2 790 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 C5orf60A6NFR6 353 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 RALAP11233 206 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 PAX7P23759 505 aa17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 EIF3BP55884 814 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 NOP14P78316 857 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-210ENST00000494566 PREPLQ4J6C6 727 aaPredicted RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms