RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 UBE3AQ05086 875 aa15.66■□□□□ 0.1
BRCA1-223ENST00000494123 SGSM1Q2NKQ1 1148 aa15.66■□□□□ 0.1
BRCA1-223ENST00000494123 ZNF699Q32M78 642 aa15.66■□□□□ 0.1
BRCA1-223ENST00000494123 FAM171A1Q5VUB5 890 aa15.66■□□□□ 0.1
BRCA1-223ENST00000494123 CD300LGQ6UXG3 332 aa15.66■□□□□ 0.1
BRCA1-223ENST00000494123 POF1BQ8WVV4 589 aa15.66■□□□□ 0.1
BRCA1-223ENST00000494123 GPR62Q9BZJ7 368 aa15.66■□□□□ 0.1
BRCA1-223ENST00000494123 VPS16Q9H269 839 aa15.66■□□□□ 0.1
BRCA1-223ENST00000494123 NDST4Q9H3R1 872 aa15.66■□□□□ 0.1
BRCA1-223ENST00000494123 RAB20Q9NX57 234 aa15.66■□□□□ 0.1
BRCA1-223ENST00000494123 LIMA1Q9UHB6 759 aaKnown RBP15.66■□□□□ 0.1
BRCA1-223ENST00000494123 LZTS1Q9Y250 596 aa15.66■□□□□ 0.1
BRCA1-223ENST00000494123 COL4A4P53420 1690 aaPredicted RBP15.65■□□□□ 0.1
BRCA1-223ENST00000494123 ARHGEF37A1IGU5 675 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 CSPG5O95196 566 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 CA8P35219 290 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 TNNC1P63316 161 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 BMS1Q14692 1282 aaKnown RBP15.65■□□□□ 0.1
BRCA1-223ENST00000494123 USP41Q3LFD5 358 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 TIGD5Q53EQ6 642 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 SCARA3Q6AZY7 606 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 KIAA1841Q6NSI8 718 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 CEP57Q86XR8 500 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 VPS52Q8N1B4 723 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 SPPL3Q8TCT6 385 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 GDPD5Q8WTR4 605 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 TAF4BQ92750 862 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 SUSD3Q96L08 255 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 TTYH1Q9H313 450 aaPredicted RBP15.65■□□□□ 0.1
BRCA1-223ENST00000494123 SNX9Q9Y5X1 595 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 EPOPA6NHQ4 379 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 SPTLC1O15269 473 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 GRM6O15303 877 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 PMM2O15305 246 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 HUS1O60921 280 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 SOD2P04179 222 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 ODC1P11926 461 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 P4HA1P13674 534 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 AARSP49588 968 aaKnown RBP eCLIP15.65■□□□□ 0.1
BRCA1-223ENST00000494123 COPB1P53618 953 aaKnown RBP15.65■□□□□ 0.1
BRCA1-223ENST00000494123 WDR72Q3MJ13 1102 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 ZNF667Q5HYK9 610 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 WDR44Q5JSH3 913 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 MIIPQ5JXC2 388 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 FKBP15Q5T1M5 1219 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 SENP8Q96LD8 212 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 MMS19Q96T76 1030 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 HERC2P3Q9BVR0 1158 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 VN1R3Q9BXE9 311 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.65■□□□□ 0.17e-6■■■■■ 74.5
BRCA1-223ENST00000494123 ENTPD7Q9NQZ7 604 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 TLR9Q9NR96 1032 aa15.65■□□□□ 0.1
BRCA1-223ENST00000494123 CHD9Q3L8U1 2897 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 RFXAPO00287 272 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 CYB561D2O14569 222 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 SYN3O14994 580 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 STAU1O95793 577 aaKnown RBP15.64■□□□□ 0.09
BRCA1-223ENST00000494123 ASS1P00966 412 aaKnown RBP15.64■□□□□ 0.09
BRCA1-223ENST00000494123 SERPINC1P01008 464 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 URODP06132 367 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 FILIP1LQ4L180 1135 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.64■□□□□ 0.09
BRCA1-223ENST00000494123 TMC7Q7Z402 723 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 APPL2Q8NEU8 664 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 MICAL1Q8TDZ2 1067 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 FAM161BQ96MY7 647 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 PI4K2AQ9BTU6 479 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 TTPALQ9BTX7 342 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 LMAN2LQ9H0V9 348 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 XYLT2Q9H1B5 865 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 PRDM12Q9H4Q4 367 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 GDAP2Q9NXN4 497 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 GCNT4Q9P109 453 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 NXF1Q9UBU9 619 aaKnown RBP15.64■□□□□ 0.09
BRCA1-223ENST00000494123 PCDHB8Q9UN66 801 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 COQ4Q9Y3A0 265 aa15.64■□□□□ 0.09
BRCA1-223ENST00000494123 M0QZQ0 153 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 LPXNO60711 386 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 TKTP29401 623 aaKnown RBP15.63■□□□□ 0.09
BRCA1-223ENST00000494123 GLUD2P49448 558 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 NOP14P78316 857 aaKnown RBP15.63■□□□□ 0.09
BRCA1-223ENST00000494123 PTPROQ16827 1216 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 SPOPLQ6IQ16 392 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 GPR153Q6NV75 609 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 GBP6Q6ZN66 633 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 TAS1R1Q7RTX1 841 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 METTL23Q86XA0 190 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 RNF168Q8IYW5 571 aaPredicted RBP15.63■□□□□ 0.09
BRCA1-223ENST00000494123 SEMA4DQ92854 862 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 ELMO3Q96BJ8 720 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 B3GALT6Q96L58 329 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 TCF25Q9BQ70 676 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 CRACR2AQ9BSW2 395 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 VRTNQ9H8Y1 702 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 DSEQ9UL01 958 aa15.63■□□□□ 0.09
BRCA1-223ENST00000494123 GTPBP10A4D1E9 387 aaKnown RBP15.62■□□□□ 0.09
BRCA1-223ENST00000494123 C2CD2LO14523 706 aa15.62■□□□□ 0.09
BRCA1-223ENST00000494123 EFEMP2O95967 443 aa15.62■□□□□ 0.09
BRCA1-223ENST00000494123 FGFR3P22607 806 aa15.62■□□□□ 0.09
BRCA1-223ENST00000494123 DNAJB1P25685 340 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms