RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 P4HA1P13674 534 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 SOX5P35711 763 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 STAT1P42224 750 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 KCNJ6P48051 423 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 TAF6P49848 677 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 CLCNKBP51801 687 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 EPHB4P54760 987 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 TNNC1P63316 161 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 DEFB103AP81534 67 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 DSC1Q08554 894 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 ASIC2Q16515 512 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 MEA1Q16626 185 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 TSR1Q2NL82 804 aaKnown RBP12.23□□□□□ -0.45
MCF2L-231ENST00000494043 WDR72Q3MJ13 1102 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 SV2CQ496J9 727 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 SFMBT2Q5VUG0 894 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 PSRC1Q6PGN9 363 aaPredicted RBP12.23□□□□□ -0.45
MCF2L-231ENST00000494043 SCARA5Q6ZMJ2 495 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 ZNF365Q70YC5 407 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 OTOP2Q7RTS6 562 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 FMNL3Q8IVF7 1028 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 UBR7Q8N806 425 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 DPF3Q92784 378 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 DDX27Q96GQ7 796 aaKnown RBP12.23□□□□□ -0.45
MCF2L-231ENST00000494043 KCNF1Q9H3M0 494 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 ZNHIT6Q9NWK9 470 aaKnown RBP12.23□□□□□ -0.45
MCF2L-231ENST00000494043 AIPL1Q9NZN9 384 aa12.23□□□□□ -0.45
MCF2L-231ENST00000494043 NXF1Q9UBU9 619 aaKnown RBP12.23□□□□□ -0.45
MCF2L-231ENST00000494043 TBKBP1A7MCY6 615 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 FOXN3O00409 490 aaPredicted RBP12.22□□□□□ -0.45
MCF2L-231ENST00000494043 SPTLC1O15269 473 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 B4GALT3O60512 393 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 UPP2O95045 317 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 PNMA6AP0CW24 399 aaPredicted RBP12.22□□□□□ -0.45
MCF2L-231ENST00000494043 FERP16591 822 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 ACO1P21399 889 aaKnown RBP12.22□□□□□ -0.45
MCF2L-231ENST00000494043 LILRA4P59901 499 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 YWHAEP62258 255 aaKnown RBP12.22□□□□□ -0.45
MCF2L-231ENST00000494043 CDK17Q00537 523 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 RNASELQ05823 741 aaKnown RBP12.22□□□□□ -0.45
MCF2L-231ENST00000494043 UPP1Q16831 310 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 HS1BP3Q53T59 392 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 TMEM240Q5SV17 173 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 SMYD5Q6GMV2 418 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 WDR59Q6PJI9 974 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 ZNF280BQ86YH2 543 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 GPIHBP1Q8IV16 184 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 TMEM139Q8IV31 216 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 COLGALT2Q8IYK4 626 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 FAM71AQ8IYT1 594 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 LRRC43Q8N309 656 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 CCDC112Q8NEF3 446 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 TOP1MTQ969P6 601 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 BAG1Q99933 345 aaPredicted RBP12.22□□□□□ -0.45
MCF2L-231ENST00000494043 LBHD1Q9BQE6 289 aaPredicted RBP12.22□□□□□ -0.45
MCF2L-231ENST00000494043 SMYD3Q9H7B4 428 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 CYP3A43Q9HB55 503 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 GDAP2Q9NXN4 497 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 CACNG4Q9UBN1 327 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 COL4A6Q14031 1691 aa12.22□□□□□ -0.45
MCF2L-231ENST00000494043 TDRD15B5MCY1 1934 aaKnown RBP12.21□□□□□ -0.45
MCF2L-231ENST00000494043 ZBBXA8MT70 800 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 KPNA7A9QM74 516 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 NRDCO43847 1150 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 DGKIO75912 1065 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 GFPT2O94808 682 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 DDHD2O94830 711 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 WEE2P0C1S8 567 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 KRT5P13647 590 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 PAX3P23760 479 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 RAP1GAPP47736 663 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 AARSP49588 968 aaKnown RBP eCLIP12.21□□□□□ -0.45
MCF2L-231ENST00000494043 CCZ1BP86790 482 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 CCZ1P86791 482 aaPredicted RBP12.21□□□□□ -0.45
MCF2L-231ENST00000494043 CYP26C1Q6V0L0 522 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 C3orf58Q8NDZ4 430 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 HERVK_113Q902F9 699 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 TRIM44Q96DX7 344 aaPredicted RBP12.21□□□□□ -0.45
MCF2L-231ENST00000494043 ZNF830Q96NB3 372 aaPredicted RBP12.21□□□□□ -0.45
MCF2L-231ENST00000494043 FAM193BQ96PV7 902 aaPredicted RBP12.21□□□□□ -0.45
MCF2L-231ENST00000494043 MMS19Q96T76 1030 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.21□□□□□ -0.45
MCF2L-231ENST00000494043 PAAF1Q9BRP4 392 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 SDCBP2Q9H190 292 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 FAM124BQ9H5Z6 455 aaPredicted RBP12.21□□□□□ -0.45
MCF2L-231ENST00000494043 RC3H2Q9HBD1 1191 aaKnown RBP12.21□□□□□ -0.45
MCF2L-231ENST00000494043 CNTN6Q9UQ52 1028 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 SNX9Q9Y5X1 595 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 NR2E3Q9Y5X4 410 aa12.21□□□□□ -0.45
MCF2L-231ENST00000494043 SCN1AP35498 2009 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 TMEM189-UBE2V1I3L0A0 370 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 SERPING1P05155 500 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 CCDC172P0C7W6 258 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 CD58P19256 250 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 USP8P40818 1118 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 PRKCIP41743 596 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 ZNF132P52740 706 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 ARID5AQ03989 594 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 KLHL30Q0D2K2 578 aa12.2□□□□□ -0.46
MCF2L-231ENST00000494043 INCA1Q0VD86 236 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms