RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 VCX3AQ9NNX9 186 aa12.34□□□□□ -0.43
BRCA1-222ENST00000493919 PCMTD2Q9NV79 361 aa12.34□□□□□ -0.43
BRCA1-222ENST00000493919 TBX21Q9UL17 535 aa12.34□□□□□ -0.43
BRCA1-222ENST00000493919 CLIC4Q9Y696 253 aa12.34□□□□□ -0.43
BRCA1-222ENST00000493919 ARPC4-TTLL3A0A0A6YYG9 625 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 A0A1B0GVG6 124 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 TMEM150BA6NC51 233 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 VWA3AA6NCI4 1184 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 HBP1O60381 514 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 P4HBP07237 508 aaKnown RBP12.33□□□□□ -0.44
BRCA1-222ENST00000493919 IDEP14735 1019 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 QARSP47897 775 aaKnown RBP12.33□□□□□ -0.44
BRCA1-222ENST00000493919 PSMC5P62195 406 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 MDM2Q00987 491 aaPredicted RBP12.33□□□□□ -0.44
BRCA1-222ENST00000493919 ACTN3Q08043 901 aaPredicted RBP12.33□□□□□ -0.44
BRCA1-222ENST00000493919 SEPT6Q14141 434 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 TWF2Q6IBS0 349 aaKnown RBP12.33□□□□□ -0.44
BRCA1-222ENST00000493919 SLC2A7Q6PXP3 512 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 DTHD1Q6ZMT9 781 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 TPH2Q8IWU9 490 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 IFT81Q8WYA0 676 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 HNRNPABQ99729 332 aaKnown RBP12.33□□□□□ -0.44
BRCA1-222ENST00000493919 SH2D3AQ9BRG2 576 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 RAB34Q9BZG1 259 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 ATAD3AQ9NVI7 634 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 ANO10Q9NW15 660 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 ATPIF1Q9UII2 106 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 UMODL1Q5DID0 1318 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 TANC1Q9C0D5 1861 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 CCDC151A5D8V7 595 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 BMP15O95972 392 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 KRT14P02533 472 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 ITGB8P26012 769 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 CYP2C18P33260 490 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 CENPAP49450 140 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 LMNB2Q03252 620 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 CRY1Q16526 586 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 BBS9Q3SYG4 887 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 MTERF2Q49AM1 385 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 GKAP1Q5VSY0 366 aaPredicted RBP12.33□□□□□ -0.44
BRCA1-222ENST00000493919 SPATA1Q5VX52 437 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 ARHGEF18Q6ZSZ5 1173 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 KIRREL3Q8IZU9 778 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 FLCNQ8NFG4 579 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 TRAPPC9Q96Q05 1148 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 USP28Q96RU2 1077 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 LBHD1Q9BQE6 289 aaPredicted RBP12.33□□□□□ -0.44
BRCA1-222ENST00000493919 WRAP73Q9P2S5 460 aaPredicted RBP12.33□□□□□ -0.44
BRCA1-222ENST00000493919 LRWD1Q9UFC0 647 aa12.33□□□□□ -0.44
BRCA1-222ENST00000493919 PP2D1A8MPX8 630 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 KIAA0355O15063 1070 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 MEFVO15553 781 aaPredicted RBP12.32□□□□□ -0.44
BRCA1-222ENST00000493919 DKC1O60832 514 aaKnown RBP eCLIP12.32□□□□□ -0.44
BRCA1-222ENST00000493919 S100A6P06703 90 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 CTSHP09668 335 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 HOXC8P31273 242 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 FXR2P51116 673 aaKnown RBP eCLIP12.32□□□□□ -0.44
BRCA1-222ENST00000493919 CCL23P55773 120 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 B2MP61769 119 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 HAUS3Q68CZ6 603 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 PLA2G4FQ68DD2 849 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 HDXQ7Z353 690 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 SPARTQ8N0X7 666 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 GOLM1Q8NBJ4 401 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 SNX29Q8TEQ0 813 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 DHX38Q92620 1227 aaKnown RBP12.32□□□□□ -0.44
BRCA1-222ENST00000493919 BADQ92934 168 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 WNT8BQ93098 351 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 CCDC43Q96MW1 224 aaKnown RBP12.32□□□□□ -0.44
BRCA1-222ENST00000493919 NOC4LQ9BVI4 516 aaKnown RBP12.32□□□□□ -0.44
BRCA1-222ENST00000493919 HERC2P3Q9BVR0 1158 aa12.32□□□□□ -0.44
BRCA1-222ENST00000493919 FAM49AQ9H0Q0 323 aaPredicted RBP12.32□□□□□ -0.44
BRCA1-222ENST00000493919 RRN3P2A6NIE6 340 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 FBXO21O94952 628 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 ALDH2P05091 517 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 MARCKSP29966 332 aaPredicted RBP12.31□□□□□ -0.44
BRCA1-222ENST00000493919 GNL1P36915 607 aaPredicted RBP12.31□□□□□ -0.44
BRCA1-222ENST00000493919 ACADSBP45954 432 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 BPIFB4P59827 614 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 BFSP2Q13515 415 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 IL17AQ16552 155 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 XKR3Q5GH77 459 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 LVRNQ6Q4G3 990 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 RUFY4Q6ZNE9 571 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 CEP128Q6ZU80 1094 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 ZNF598Q86UK7 904 aaKnown RBP12.31□□□□□ -0.44
BRCA1-222ENST00000493919 SERINC5Q86VE9 423 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 ARHGEF2Q92974 986 aaKnown RBP12.31□□□□□ -0.44
BRCA1-222ENST00000493919 SCLYQ96I15 445 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 ZSWIM4Q9H7M6 989 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 CYLDQ9NQC7 956 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 NRBP2Q9NSY0 501 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 BMP2KQ9NSY1 1161 aaPredicted RBP12.31□□□□□ -0.44
BRCA1-222ENST00000493919 SCHIP1Q9P0W5 487 aaPredicted RBP12.31□□□□□ -0.44
BRCA1-222ENST00000493919 FBXL5Q9UKA1 691 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 C15orf41Q9Y2V0 281 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 COL1A2P08123 1366 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 ASAP2O43150 1006 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 MED24O75448 989 aa12.31□□□□□ -0.44
BRCA1-222ENST00000493919 SLITRK3O94933 977 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms