RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 CASP14P31944 242 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 SLC11A1P49279 550 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 TAF6P49848 677 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 FXR1P51114 621 aaKnown RBP eCLIP20.8■□□□□ 0.92
USP39-218ENST00000493829 TNNC1P63316 161 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 UROC1Q96N76 676 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 TTYH3Q9C0H2 523 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 SMYD3Q9H7B4 428 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 SNX9Q9Y5X1 595 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 MRPL42Q9Y6G3 142 aaKnown RBP20.8■□□□□ 0.92
USP39-218ENST00000493829 KIAA1671Q9BY89 1806 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 NT5C1B-RDH14C9J2C7 533 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 RPL9P32969 192 aaKnown RBP20.8■□□□□ 0.92
USP39-218ENST00000493829 RABGGTBP53611 331 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 SV2CQ496J9 727 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 DDX27Q96GQ7 796 aaKnown RBP20.8■□□□□ 0.92
USP39-218ENST00000493829 KREMEN1Q96MU8 473 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 MMS19Q96T76 1030 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 CEP72Q9P209 647 aa20.8■□□□□ 0.92
USP39-218ENST00000493829 CEP290O15078 2479 aa20.79■□□□□ 0.92
USP39-218ENST00000493829 TLL1O43897 1013 aa20.79■□□□□ 0.92
USP39-218ENST00000493829 CD58P19256 250 aa20.79■□□□□ 0.92
USP39-218ENST00000493829 PNPLA4P41247 253 aa20.79■□□□□ 0.92
USP39-218ENST00000493829 ASPAP45381 313 aa20.79■□□□□ 0.92
USP39-218ENST00000493829 LILRA4P59901 499 aa20.79■□□□□ 0.92
USP39-218ENST00000493829 TBX2Q13207 712 aaPredicted RBP20.79■□□□□ 0.92
USP39-218ENST00000493829 CUL2Q13617 745 aa20.79■□□□□ 0.92
USP39-218ENST00000493829 TRIM14Q14142 442 aa20.79■□□□□ 0.92
USP39-218ENST00000493829 FAM109BQ6ICB4 259 aaPredicted RBP20.79■□□□□ 0.92
USP39-218ENST00000493829 CMTR2Q8IYT2 770 aaKnown RBP20.79■□□□□ 0.92
USP39-218ENST00000493829 TAF4BQ92750 862 aa20.79■□□□□ 0.92
USP39-218ENST00000493829 NUP58Q9BVL2 599 aa20.79■□□□□ 0.92
USP39-218ENST00000493829 CWH43Q9H720 699 aa20.79■□□□□ 0.92
USP39-218ENST00000493829 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.79■□□□□ 0.92
USP39-218ENST00000493829 GRXCR1A8MXD5 290 aa20.78■□□□□ 0.92
USP39-218ENST00000493829 KPNA7A9QM74 516 aa20.78■□□□□ 0.92
USP39-218ENST00000493829 NRP1O14786 923 aa20.78■□□□□ 0.92
USP39-218ENST00000493829 TPM1P09493 284 aa20.78■□□□□ 0.92
USP39-218ENST00000493829 BRCC3P46736 316 aa20.78■□□□□ 0.92
USP39-218ENST00000493829 ADKP55263 362 aaKnown RBP20.78■□□□□ 0.92
USP39-218ENST00000493829 BCAR1P56945 870 aa20.78■□□□□ 0.92
USP39-218ENST00000493829 RASIP1Q5U651 963 aa20.78■□□□□ 0.92
USP39-218ENST00000493829 SPAG5Q96R06 1193 aa20.78■□□□□ 0.92
USP39-218ENST00000493829 LCHNA4D1U4 455 aa20.77■□□□□ 0.92
USP39-218ENST00000493829 WEE2P0C1S8 567 aa20.77■□□□□ 0.92
USP39-218ENST00000493829 USP8P40818 1118 aa20.77■□□□□ 0.92
USP39-218ENST00000493829 MFAP3P55082 362 aa20.77■□□□□ 0.92
USP39-218ENST00000493829 CDH8P55286 799 aa20.77■□□□□ 0.92
USP39-218ENST00000493829 ARID5BQ14865 1188 aa20.77■□□□□ 0.92
USP39-218ENST00000493829 DSTYKQ6XUX3 929 aa20.77■□□□□ 0.92
USP39-218ENST00000493829 TMEM173Q86WV6 379 aaPredicted RBP20.77■□□□□ 0.92
USP39-218ENST00000493829 RSPH1Q8WYR4 309 aa20.77■□□□□ 0.92
USP39-218ENST00000493829 GDF15Q99988 308 aa20.77■□□□□ 0.92
USP39-218ENST00000493829 NAA15Q9BXJ9 866 aaKnown RBP20.77■□□□□ 0.92
USP39-218ENST00000493829 SDCBP2Q9H190 292 aa20.77■□□□□ 0.92
USP39-218ENST00000493829 LRRC53A6NM62 1247 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 GOLGA6L6A8MZA4 724 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 MFAP3LO75121 409 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 STAU1O95793 577 aaKnown RBP20.77■□□□□ 0.91
USP39-218ENST00000493829 P4HA1P13674 534 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 HTRA4P83105 476 aaPredicted RBP20.77■□□□□ 0.91
USP39-218ENST00000493829 CCDC173Q0VFZ6 552 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 DRAP1Q14919 205 aaPredicted RBP20.77■□□□□ 0.91
USP39-218ENST00000493829 FIGNQ5HY92 759 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 DCLRE1AQ6PJP8 1040 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 CD300LGQ6UXG3 332 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 PHOSPHO2Q8TCD6 241 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 BAP1Q92560 729 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 PDLIM2Q96JY6 352 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 VRTNQ9H8Y1 702 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 MARCH5Q9NX47 278 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 CAPN11Q9UMQ6 739 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 FAN1Q9Y2M0 1017 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 LUC7L2Q9Y383 392 aaKnown RBP20.77■□□□□ 0.91
USP39-218ENST00000493829 INSL6Q9Y581 213 aa20.77■□□□□ 0.91
USP39-218ENST00000493829 PTMAP06454 111 aaKnown RBP20.76■□□□□ 0.91
USP39-218ENST00000493829 GALTP07902 379 aa20.76■□□□□ 0.91
USP39-218ENST00000493829 MYOGP15173 224 aa20.76■□□□□ 0.91
USP39-218ENST00000493829 RFX1P22670 979 aa20.76■□□□□ 0.91
USP39-218ENST00000493829 TBXAS1P24557 533 aaPredicted RBP20.76■□□□□ 0.91
USP39-218ENST00000493829 KRT9P35527 623 aa20.76■□□□□ 0.91
USP39-218ENST00000493829 GCNT1Q02742 428 aa20.76■□□□□ 0.91
USP39-218ENST00000493829 ARID5AQ03989 594 aa20.76■□□□□ 0.91
USP39-218ENST00000493829 TIGD5Q53EQ6 642 aa20.76■□□□□ 0.91
USP39-218ENST00000493829 BCL7CQ8WUZ0 217 aaPredicted RBP20.76■□□□□ 0.91
USP39-218ENST00000493829 TMEM175Q9BSA9 504 aa20.76■□□□□ 0.91
USP39-218ENST00000493829 GBF1Q92538 1859 aa20.76■□□□□ 0.91
USP39-218ENST00000493829 TSC2P49815 1807 aa20.75■□□□□ 0.91
USP39-218ENST00000493829 A0A1W2PQJ5 194 aa20.75■□□□□ 0.91
USP39-218ENST00000493829 AKR1B15C9JRZ8 316 aaPredicted RBP20.75■□□□□ 0.91
USP39-218ENST00000493829 F8VZ95 297 aa20.75■□□□□ 0.91
USP39-218ENST00000493829 CYB561D2O14569 222 aa20.75■□□□□ 0.91
USP39-218ENST00000493829 TADA2AO75478 443 aa20.75■□□□□ 0.91
USP39-218ENST00000493829 ALDH2P05091 517 aa20.75■□□□□ 0.91
USP39-218ENST00000493829 KRT5P13647 590 aa20.75■□□□□ 0.91
USP39-218ENST00000493829 ORC1Q13415 861 aa20.75■□□□□ 0.91
USP39-218ENST00000493829 PDXDC1Q6P996 788 aa20.75■□□□□ 0.91
USP39-218ENST00000493829 CCDC186Q7Z3E2 898 aa20.75■□□□□ 0.91
USP39-218ENST00000493829 FIBCD1Q8N539 461 aa20.75■□□□□ 0.91
USP39-218ENST00000493829 SENP8Q96LD8 212 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms