RNA–Protein interactions for RNA: ENST00000493815.5

PDLIM7-208, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,686 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-208ENST00000493815 TRAPPC3O43617 180 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 CLSTN1O94985 981 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 AARSP49588 968 aaKnown RBP eCLIP19.25■□□□□ 0.674e-9■■□□□ 11.9
PDLIM7-208ENST00000493815 AP3M2P53677 418 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 MARSP56192 900 aaKnown RBP19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 KIAA1841Q6NSI8 718 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 PRSS55Q6UWB4 352 aaPredicted RBP19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 DSTYKQ6XUX3 929 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 DHX40Q8IX18 779 aaKnown RBP19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 MICALL1Q8N3F8 863 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 SUSD3Q96L08 255 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 SENP8Q96LD8 212 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 ZNF560Q96MR9 790 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 GAS2L1Q99501 681 aaPredicted RBP19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 PI4K2AQ9BTU6 479 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 HERC2P3Q9BVR0 1158 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 TMEM8AQ9HCN3 771 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 MTCH2Q9Y6C9 303 aa19.25■□□□□ 0.67
PDLIM7-208ENST00000493815 KPNA7A9QM74 516 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 CXCL14O95715 111 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 HLA-DRAP01903 254 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 CTSAP10619 480 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 PIK3CAP42336 1068 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 MTIF2P46199 727 aaKnown RBP19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 GLUD2P49448 558 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 MXI1P50539 228 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 ENPEPQ07075 957 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 PTPROQ16827 1216 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 USP41Q3LFD5 358 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 KRT39Q6A163 491 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 ADGRD2Q7Z7M1 963 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 LRRC52Q8N7C0 313 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 RIN2Q8WYP3 895 aaPredicted RBP19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 TTPALQ9BTX7 342 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 XYLT2Q9H1B5 865 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 CHST7Q9NS84 486 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 MAGEC2Q9UBF1 373 aaPredicted RBP19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 KCNJ18B7U540 433 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 FSCN2O14926 492 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 URODP06132 367 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 RPL17P18621 184 aaKnown RBP19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 FGFR3P22607 806 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 GTF2H1P32780 548 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 KCNH2Q12809 1159 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 ELAVL2Q12926 359 aaKnown RBP19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 MYO1EQ12965 1108 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 KCNJ12Q14500 433 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 PTPN14Q15678 1187 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 SV2CQ496J9 727 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 KIAA0319Q5VV43 1072 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 RBM23Q86U06 439 aaKnown RBP19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 SEMA4DQ92854 862 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 HSD3B7Q9H2F3 369 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 SNX9Q9Y5X1 595 aa19.24■□□□□ 0.67
PDLIM7-208ENST00000493815 M0QZQ0 153 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 CYB561D2O14569 222 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 PER2O15055 1255 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 STX10O60499 249 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 FOSL2P15408 326 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 PNPLA4P41247 253 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 FMO5P49326 533 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 DSG1Q02413 1049 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 TCP11X2Q5H9J9 407 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 CDKAL1Q5VV42 579 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 SPOPLQ6IQ16 392 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 LUZP1Q86V48 1076 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 GLYCTKQ8IVS8 523 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 FAM114A1Q8IWE2 563 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 MRPL43Q8N983 215 aaKnown RBP19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 BPIFA3Q9BQP9 254 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 LMAN2LQ9H0V9 348 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 CBX8Q9HC52 389 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 MRPL17Q9NRX2 175 aaKnown RBP19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 NXF1Q9UBU9 619 aaKnown RBP19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 PRUNE2Q8WUY3 3088 aa19.23■□□□□ 0.67
PDLIM7-208ENST00000493815 PRRC2BQ5JSZ5 2229 aaKnown RBP19.22■□□□□ 0.67
PDLIM7-208ENST00000493815 C2orf71A6NGG8 1288 aa19.22■□□□□ 0.67
PDLIM7-208ENST00000493815 SMC1AQ14683 1233 aaKnown RBP19.22■□□□□ 0.67
PDLIM7-208ENST00000493815 IQCB1Q15051 598 aa19.22■□□□□ 0.67
PDLIM7-208ENST00000493815 ZNF699Q32M78 642 aa19.22■□□□□ 0.67
PDLIM7-208ENST00000493815 WDR72Q3MJ13 1102 aa19.22■□□□□ 0.67
PDLIM7-208ENST00000493815 NGRNQ9NPE2 291 aaKnown RBP19.22■□□□□ 0.67
PDLIM7-208ENST00000493815 PCDHB8Q9UN66 801 aa19.22■□□□□ 0.67
PDLIM7-208ENST00000493815 POLIQ9UNA4 740 aa19.22■□□□□ 0.67
PDLIM7-208ENST00000493815 AFPP02771 609 aaKnown RBP19.21■□□□□ 0.67
PDLIM7-208ENST00000493815 PRKCSHP14314 528 aaPredicted RBP19.21■□□□□ 0.67
PDLIM7-208ENST00000493815 GTF2F1P35269 517 aaKnown RBP eCLIP19.21■□□□□ 0.673e-6■■□□□ 12.7
PDLIM7-208ENST00000493815 MYL7Q01449 175 aa19.21■□□□□ 0.67
PDLIM7-208ENST00000493815 CCDC85BQ15834 202 aaPredicted RBP19.21■□□□□ 0.67
PDLIM7-208ENST00000493815 VARS2Q5ST30 1063 aaKnown RBP19.21■□□□□ 0.67
PDLIM7-208ENST00000493815 WSCD1Q658N2 575 aa19.21■□□□□ 0.67
PDLIM7-208ENST00000493815 LRSAM1Q6UWE0 723 aa19.21■□□□□ 0.67
PDLIM7-208ENST00000493815 LNX1Q8TBB1 728 aaPredicted RBP19.21■□□□□ 0.67
PDLIM7-208ENST00000493815 TUBGCP2Q9BSJ2 902 aa19.21■□□□□ 0.67
PDLIM7-208ENST00000493815 TAB2Q9NYJ8 693 aa19.21■□□□□ 0.67
PDLIM7-208ENST00000493815 STK39Q9UEW8 545 aa19.21■□□□□ 0.67
PDLIM7-208ENST00000493815 XIRP2A4UGR9 3374 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms