RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 NDUFA10O95299 355 aa13.58□□□□□ -0.24
VPS52-220ENST00000493674 CLCN1P35523 988 aa13.58□□□□□ -0.24
VPS52-220ENST00000493674 EIF4A3P38919 411 aaKnown RBP13.58□□□□□ -0.24
VPS52-220ENST00000493674 AFF1P51825 1210 aaKnown RBP13.58□□□□□ -0.24
VPS52-220ENST00000493674 PRPF38BQ5VTL8 546 aaKnown RBP13.58□□□□□ -0.24
VPS52-220ENST00000493674 TOGARAM2Q6ZUX3 1019 aa13.58□□□□□ -0.24
VPS52-220ENST00000493674 LIMS2Q7Z4I7 341 aa13.58□□□□□ -0.24
VPS52-220ENST00000493674 EIF3CQ99613 913 aaKnown RBP13.58□□□□□ -0.24
VPS52-220ENST00000493674 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.58□□□□□ -0.243e-6■■■■■ 130.4
VPS52-220ENST00000493674 TMEM39AQ9NV64 488 aa13.58□□□□□ -0.24
VPS52-220ENST00000493674 SLC38A7Q9NVC3 462 aa13.58□□□□□ -0.24
VPS52-220ENST00000493674 TMEM161AQ9NX61 479 aa13.58□□□□□ -0.24
VPS52-220ENST00000493674 NOCTQ9UK39 431 aaKnown RBP13.58□□□□□ -0.24
VPS52-220ENST00000493674 AGAP1Q9UPQ3 857 aa13.58□□□□□ -0.24
VPS52-220ENST00000493674 REXO2Q9Y3B8 237 aaKnown RBP13.58□□□□□ -0.24
VPS52-220ENST00000493674 ADGRG1Q9Y653 693 aa13.58□□□□□ -0.24
VPS52-220ENST00000493674 EPN1Q9Y6I3 576 aaPredicted RBP13.58□□□□□ -0.24
VPS52-220ENST00000493674 ATP8B3O60423 1300 aa13.58□□□□□ -0.24
VPS52-220ENST00000493674 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.57□□□□□ -0.24
VPS52-220ENST00000493674 TRIM43BA6NCK2 446 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 ENPP3O14638 875 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 ZNF263O14978 683 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 ZNF500O60304 480 aaPredicted RBP13.57□□□□□ -0.24
VPS52-220ENST00000493674 OFD1O75665 1012 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 TIMP1P01033 207 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 CCL23P55773 120 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 PTK2Q05397 1052 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 KLHL30Q0D2K2 578 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 GRIK3Q13003 919 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 ZNF667Q5HYK9 610 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 CLLU1OSQ5K130 101 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 ZNF571Q7Z3V5 609 aaPredicted RBP13.57□□□□□ -0.24
VPS52-220ENST00000493674 CCAR2Q8N163 923 aaKnown RBP13.57□□□□□ -0.24
VPS52-220ENST00000493674 EPS8L1Q8TE68 723 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 DPF3Q92784 378 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 TRIM43Q96BQ3 446 aaPredicted RBP13.57□□□□□ -0.24
VPS52-220ENST00000493674 HPDLQ96IR7 371 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 HAUS4Q9H6D7 363 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 CYP3A43Q9HB55 503 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 SPTLC3Q9NUV7 552 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 POLIQ9UNA4 740 aa13.57□□□□□ -0.24
VPS52-220ENST00000493674 THP07101 528 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 KRT19P08727 400 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 CCDC172P0C7W6 258 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 ITGB8P26012 769 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 CYLC1P35663 651 aaPredicted RBP13.56□□□□□ -0.24
VPS52-220ENST00000493674 PNPLA4P41247 253 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 SCNN1GP51170 649 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 KIF11P52732 1056 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 INCA1Q0VD86 236 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 TDRD12Q587J7 1177 aaKnown RBP13.56□□□□□ -0.24
VPS52-220ENST00000493674 CNKSR3Q6P9H4 555 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 SLC30A5Q8TAD4 765 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 DDX1Q92499 740 aaKnown RBP13.56□□□□□ -0.24
VPS52-220ENST00000493674 ZNF560Q96MR9 790 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 RPS6KC1Q96S38 1066 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 SDCBP2Q9H190 292 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 GOLGA2P5Q9HBQ8 144 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 GDAP2Q9NXN4 497 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 PPP2R2CQ9Y2T4 447 aa13.56□□□□□ -0.24
VPS52-220ENST00000493674 GREB1Q4ZG55 1949 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 USP27XA6NNY8 438 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 TULP1O00294 542 aaPredicted RBP13.55□□□□□ -0.24
VPS52-220ENST00000493674 CYP26A1O43174 497 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 CHRNB2P17787 502 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 RPL9P32969 192 aaKnown RBP13.55□□□□□ -0.24
VPS52-220ENST00000493674 AARSP49588 968 aaKnown RBP eCLIP13.55□□□□□ -0.24
VPS52-220ENST00000493674 YWHAEP62258 255 aaKnown RBP13.55□□□□□ -0.24
VPS52-220ENST00000493674 ARID5AQ03989 594 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 DSC1Q08554 894 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 MYO1EQ12965 1108 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 BMS1Q14692 1282 aaKnown RBP13.55□□□□□ -0.24
VPS52-220ENST00000493674 SLC18A3Q16572 532 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 WDR72Q3MJ13 1102 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 ZNF662Q6ZS27 426 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 NOP9Q86U38 636 aaKnown RBP13.55□□□□□ -0.24
VPS52-220ENST00000493674 GPIHBP1Q8IV16 184 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 REXO1L1PQ8IX06 675 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 C17orf53Q8N3J3 647 aaPredicted RBP13.55□□□□□ -0.24
VPS52-220ENST00000493674 ACRBPQ8NEB7 543 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 LNX1Q8TBB1 728 aaPredicted RBP13.55□□□□□ -0.24
VPS52-220ENST00000493674 RSPH1Q8WYR4 309 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 CCDC42Q96M95 316 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 DESI2Q9BSY9 194 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 SMYD3Q9H7B4 428 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 CISHQ9NSE2 258 aa13.55□□□□□ -0.24
VPS52-220ENST00000493674 ZNF638Q14966 1978 aaKnown RBP13.54□□□□□ -0.24
VPS52-220ENST00000493674 A0A087X0T9 212 aa13.54□□□□□ -0.24
VPS52-220ENST00000493674 DDX3XO00571 662 aaKnown RBP eCLIP13.54□□□□□ -0.24
VPS52-220ENST00000493674 SPTLC1O15269 473 aa13.54□□□□□ -0.24
VPS52-220ENST00000493674 CILPO75339 1184 aa13.54□□□□□ -0.24
VPS52-220ENST00000493674 CCDC175P0C221 793 aa13.54□□□□□ -0.24
VPS52-220ENST00000493674 FAM228BP0C875 321 aa13.54□□□□□ -0.24
VPS52-220ENST00000493674 P4HA1P13674 534 aa13.54□□□□□ -0.24
VPS52-220ENST00000493674 CYP11B1P15538 503 aa13.54□□□□□ -0.24
VPS52-220ENST00000493674 MSNP26038 577 aaKnown RBP13.54□□□□□ -0.24
VPS52-220ENST00000493674 TAF6P49848 677 aa13.54□□□□□ -0.24
VPS52-220ENST00000493674 TUSC3Q13454 348 aa13.54□□□□□ -0.24
VPS52-220ENST00000493674 MFSD5Q6N075 450 aa13.54□□□□□ -0.24
VPS52-220ENST00000493674 GLB1LQ6UWU2 654 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms