RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 ATP2B1P20020 1258 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 VIPR2P41587 438 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 TXKP42681 527 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 CXCL12P48061 93 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 MCM2P49736 904 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 SRSF5Q13243 272 aaKnown RBP14.37□□□□□ -0.11
HDAC3-213ENST00000492506 SIM2Q14190 667 aaPredicted RBP14.37□□□□□ -0.11
HDAC3-213ENST00000492506 PPP2R5DQ14738 602 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 DCAF4L1Q3SXM0 396 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 XKR4Q5GH76 650 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 NT5DC1Q5TFE4 455 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 ALKAL1Q6UXT8 129 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 HS6ST3Q8IZP7 471 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 SMARCD2Q92925 531 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 ADPGKQ9BRR6 497 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 TRPV4Q9HBA0 871 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 INSL5Q9Y5Q6 135 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 BAHCC1Q9P281 2608 aa14.37□□□□□ -0.11
HDAC3-213ENST00000492506 CHURC1-FNTBB4DL54 471 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 ZNF197O14709 1029 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 MED24O75448 989 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 PAPSS2O95340 614 aaPredicted RBP14.36□□□□□ -0.11
HDAC3-213ENST00000492506 ELF1P32519 619 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 KRT2P35908 639 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 NAMPTP43490 491 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 FNTBP49356 437 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 EPHA5P54756 1037 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 MLLT6P55198 1093 aaPredicted RBP14.36□□□□□ -0.11
HDAC3-213ENST00000492506 PTGDRQ13258 359 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 PDZD4Q76G19 769 aaPredicted RBP14.36□□□□□ -0.11
HDAC3-213ENST00000492506 SPEM1Q8N4L4 309 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 DEPDC1BQ8WUY9 529 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 KIFC3Q9BVG8 833 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 TMEM60Q9H2L4 133 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 CYP4F11Q9HBI6 524 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 TUFT1Q9NNX1 390 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 C2orf42Q9NWW7 574 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 GEMIN8Q9NWZ8 242 aaKnown RBP14.36□□□□□ -0.11
HDAC3-213ENST00000492506 CEP72Q9P209 647 aa14.36□□□□□ -0.11
HDAC3-213ENST00000492506 FAM208BQ5VWN6 2430 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 WDFY3Q8IZQ1 3526 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 SMTNL1A8MU46 457 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 EPB41L2O43491 1005 aaKnown RBP14.35□□□□□ -0.11
HDAC3-213ENST00000492506 NEMFO60524 1076 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 PFKFB2O60825 505 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 GJA1P17302 382 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 LIG1P18858 919 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 CYP11B2P19099 503 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 CCNE1P24864 410 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 HOXC13P31276 330 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 TMEM132AQ24JP5 1023 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 PADI6Q6TGC4 694 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 MFSD6LQ8IWD5 586 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 CEP120Q8N960 986 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 RSPRY1Q96DX4 576 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 ZMAT2Q96NC0 199 aaKnown RBP14.35□□□□□ -0.11
HDAC3-213ENST00000492506 NACC1Q96RE7 527 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 KIF2CQ99661 725 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 ARID3AQ99856 593 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 PDRG1Q9NUG6 133 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 FBXL5Q9UKA1 691 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 TPCN1Q9ULQ1 816 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 PAXBP1Q9Y5B6 917 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 SPEGQ15772 3267 aa14.35□□□□□ -0.11
HDAC3-213ENST00000492506 ATG2BQ96BY7 2078 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 ANK1P16157 1881 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 TM4SF5O14894 197 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 SYN3O14994 580 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 MEFVO15553 781 aaPredicted RBP14.34□□□□□ -0.11
HDAC3-213ENST00000492506 SLFN14P0C7P3 912 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 CNR2P34972 360 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 ARPP19P56211 112 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 TERF2Q15554 542 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 CYP4A22Q5TCH4 519 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 ATF7IP2Q5U623 682 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 TPGS2Q68CL5 300 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 Q6ZS52 159 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 DEPTORQ8TB45 409 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 ZSCAN18Q8TBC5 510 aaPredicted RBP14.34□□□□□ -0.11
HDAC3-213ENST00000492506 CHAMP1Q96JM3 812 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 POLR3CQ9BUI4 534 aaPredicted RBP14.34□□□□□ -0.11
HDAC3-213ENST00000492506 POLD4Q9HCU8 107 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 PTPRHQ9HD43 1115 aa14.34□□□□□ -0.11
HDAC3-213ENST00000492506 RBM12Q9NTZ6 932 aaKnown RBP14.34□□□□□ -0.11
HDAC3-213ENST00000492506 ORC3Q9UBD5 711 aaPredicted RBP14.34□□□□□ -0.11
HDAC3-213ENST00000492506 DENND4CQ5VZ89 1909 aa14.33□□□□□ -0.11
HDAC3-213ENST00000492506 HEPACAM2A8MVW5 462 aa14.33□□□□□ -0.12
HDAC3-213ENST00000492506 BTBD18B2RXH4 712 aa14.33□□□□□ -0.12
HDAC3-213ENST00000492506 PODXLO00592 558 aa14.33□□□□□ -0.12
HDAC3-213ENST00000492506 CLGNO14967 610 aa14.33□□□□□ -0.12
HDAC3-213ENST00000492506 ZNF263O14978 683 aa14.33□□□□□ -0.12
HDAC3-213ENST00000492506 PMLP29590 882 aa14.33□□□□□ -0.12
HDAC3-213ENST00000492506 GRM5P41594 1212 aa14.33□□□□□ -0.12
HDAC3-213ENST00000492506 SOX9P48436 509 aa14.33□□□□□ -0.12
HDAC3-213ENST00000492506 TWF1Q12792 350 aa14.33□□□□□ -0.12
HDAC3-213ENST00000492506 TXNDC11Q6PKC3 985 aa14.33□□□□□ -0.12
HDAC3-213ENST00000492506 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.33□□□□□ -0.12
HDAC3-213ENST00000492506 LONP2Q86WA8 852 aa14.33□□□□□ -0.12
HDAC3-213ENST00000492506 FAM160A2Q8N612 972 aaPredicted RBP14.33□□□□□ -0.12
HDAC3-213ENST00000492506 SHKBP1Q8TBC3 707 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms