RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 SCFD2Q8WU76 684 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 VCAM1P19320 739 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 PWP1Q13610 501 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 AMHR2Q16671 573 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 SGSM1Q2NKQ1 1148 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 ATP6V0D2Q8N8Y2 350 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 RRAGCQ9HB90 399 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 LGALS16A8MUM7 142 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 GPR182O15218 404 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 IL18RAPO95256 599 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 APRTP07741 180 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 SCP2P22307 547 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 RFX8Q6ZV50 586 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 MCEEQ96PE7 176 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 PCDHB12Q9Y5F1 795 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 MYL4P12829 197 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 CDC16Q13042 620 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 NCAPHQ15003 741 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 CRAMP1Q96RY5 1269 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 NT5C1AQ9BXI3 368 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 LY9Q9HBG7 655 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 HDAC6Q9UBN7 1215 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 DNMT1P26358 1616 aaKnown RBP13.76□□□□□ -0.21
COL6A3-212ENST00000491769 PSMA3P25788 255 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 GUCY1A2P33402 732 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 RFC5P40937 340 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 LAMC2Q13753 1193 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 EZH2Q15910 746 aaKnown RBP13.76□□□□□ -0.21
COL6A3-212ENST00000491769 EPHA10Q5JZY3 1008 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 CCDC137Q6PK04 289 aaKnown RBP13.76□□□□□ -0.21
COL6A3-212ENST00000491769 TMC7Q7Z402 723 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 AGPAT1Q99943 283 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 OSGEPL1Q9H4B0 414 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 C20orf96Q9NUD7 363 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-212ENST00000491769 BICRAQ9NZM4 1560 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 ATP1A3P13637 1013 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 FAM162AQ96A26 154 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 C17orf80Q9BSJ5 609 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 ADNPQ9H2P0 1102 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 NMRK2Q9NPI5 230 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 HBP1O60381 514 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 MAN1A2O60476 641 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 ENDOD1O94919 500 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 PCDH8O95206 1070 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 CKBP12277 381 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 BTKQ06187 659 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 DEPDC1Q5TB30 811 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 FHOD1Q9Y613 1164 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 KIAA0391O15091 583 aaKnown RBP13.76□□□□□ -0.21
COL6A3-212ENST00000491769 RHOBTB1O94844 696 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 NDUFB10O96000 172 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 ALDH6A1Q02252 535 aaKnown RBP13.76□□□□□ -0.21
COL6A3-212ENST00000491769 RD3Q7Z3Z2 195 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 PLEKHH3Q7Z736 793 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 CIPCQ9C0C6 399 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 CDHR2Q9BYE9 1310 aa13.76□□□□□ -0.21
COL6A3-212ENST00000491769 ARHGEF9O43307 516 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 FAM200BP0CF97 657 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 HPGDP15428 266 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 PMS1P54277 932 aaKnown RBP13.75□□□□□ -0.21
COL6A3-212ENST00000491769 TBL3Q12788 808 aaKnown RBP13.75□□□□□ -0.21
COL6A3-212ENST00000491769 GRAMD4Q6IC98 578 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 CDC42EP5Q6NZY7 148 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 PRR29P0C7W0 189 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 CENPPQ6IPU0 288 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 CCDC3Q9BQI4 270 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 TASP1Q9H6P5 420 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 RRAGDQ9NQL2 400 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-212ENST00000491769 GOLGA8RI6L899 631 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 PQBP1O60828 265 aaKnown RBP13.75□□□□□ -0.21
COL6A3-212ENST00000491769 ACADSBP45954 432 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 NCKAP1LP55160 1127 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 TRADDQ15628 312 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 MDH1BQ5I0G3 518 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 GLRA4Q5JXX5 417 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 CLEC10AQ8IUN9 316 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 CHST13Q8NET6 341 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 NEDD1Q8NHV4 660 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 TIPINQ9BVW5 301 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 P4HA2O15460 535 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 AMPD2Q01433 879 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 PARD6BQ9BYG5 372 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 ABHD10Q9NUJ1 306 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 PKD2L2Q9NZM6 624 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 RAG1P15918 1043 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 GUCY2CP25092 1073 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 CYP2C19P33261 490 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 CARSP49589 748 aaKnown RBP13.75□□□□□ -0.21
COL6A3-212ENST00000491769 HDAC4P56524 1084 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 ORC2Q13416 577 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-212ENST00000491769 PRR5LQ6MZQ0 368 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 CPA4Q9UI42 421 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 APPL1Q9UKG1 709 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 KDM6AO15550 1401 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-212ENST00000491769 CAND2O75155 1236 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 TAF6P49848 677 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 ZNF555Q8NEP9 628 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 ERLEC1Q96DZ1 483 aa13.75□□□□□ -0.21
COL6A3-212ENST00000491769 TGS1Q96RS0 853 aaKnown RBP13.75□□□□□ -0.21
COL6A3-212ENST00000491769 TCF7P36402 384 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms