RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 TUFT1Q9NNX1 390 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 XPO7Q9UIA9 1087 aaKnown RBP13.52□□□□□ -0.25
SHOX2-205ENST00000490689 KRT38O76015 456 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 BGNP21810 368 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 NFIAQ12857 509 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 NFX1Q12986 1120 aaKnown RBP13.52□□□□□ -0.25
SHOX2-205ENST00000490689 WLSQ5T9L3 541 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 RNF220Q5VTB9 566 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 TTC27Q6P3X3 843 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 ECHDC2Q86YB7 292 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 B4GALNT2Q8NHY0 566 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 TLCD1Q96CP7 247 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 PCMTD2Q9NV79 361 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 IP6K2Q9UHH9 426 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 PIK3C2AO00443 1686 aa13.52□□□□□ -0.25
SHOX2-205ENST00000490689 EIF3DO15371 548 aaKnown RBP eCLIP13.51□□□□□ -0.25
SHOX2-205ENST00000490689 CST8O60676 142 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 APRTP07741 180 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 SLC1A1P43005 524 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 ALCAMQ13740 583 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 ARSHQ5FYA8 562 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 LRRC6Q86X45 466 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 THNSL1Q8IYQ7 743 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 TMEM120AQ9BXJ8 343 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 C21orf2O43822 256 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 RPS6KA4O75676 772 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 PECAM1P16284 738 aaPredicted RBP13.51□□□□□ -0.25
SHOX2-205ENST00000490689 PRKG1Q13976 671 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 ARMC3Q5W041 872 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 C11orf63Q6NUN7 778 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 CPNE8Q86YQ8 564 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 MAP7D3Q8IWC1 876 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 C1orf131Q8NDD1 294 aaKnown RBP13.51□□□□□ -0.25
SHOX2-205ENST00000490689 TCP10LQ8TDR4 215 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 RTFDC1Q9BY42 306 aaPredicted RBP13.51□□□□□ -0.25
SHOX2-205ENST00000490689 MTFR1LQ9H019 292 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 CORO1CQ9ULV4 474 aaPredicted RBP13.51□□□□□ -0.25
SHOX2-205ENST00000490689 INPP5FQ9Y2H2 1132 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 TBX3O15119 743 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 STK10O94804 968 aaKnown RBP13.51□□□□□ -0.25
SHOX2-205ENST00000490689 ETS1P14921 441 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 GEMIN4P57678 1058 aaKnown RBP13.51□□□□□ -0.25
SHOX2-205ENST00000490689 EIF3EP60228 445 aaKnown RBP13.51□□□□□ -0.25
SHOX2-205ENST00000490689 LLGL2Q6P1M3 1020 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 RSPH3Q86UC2 560 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 ARHGAP18Q8N392 663 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 GALNT4Q8N4A0 578 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 FAM13CQ8NE31 585 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 MOV10L1Q9BXT6 1211 aaKnown RBP13.51□□□□□ -0.25
SHOX2-205ENST00000490689 RAB6BQ9NRW1 208 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 BCAP29Q9UHQ4 241 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 AJAP1Q9UKB5 411 aaPredicted RBP13.51□□□□□ -0.25
SHOX2-205ENST00000490689 USP20Q9Y2K6 914 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 LRCH1Q9Y2L9 728 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 MTO1Q9Y2Z2 717 aaKnown RBP13.51□□□□□ -0.25
SHOX2-205ENST00000490689 ASTN1O14525 1302 aa13.51□□□□□ -0.25
SHOX2-205ENST00000490689 GTPBP10A4D1E9 387 aaKnown RBP13.5□□□□□ -0.25
SHOX2-205ENST00000490689 TMEM150BA6NC51 233 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 HSPA4LO95757 839 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 ART3Q13508 389 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 FAM71DQ8N9W8 422 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 ZNF75CPQ92670 426 aaPredicted RBP13.5□□□□□ -0.25
SHOX2-205ENST00000490689 ATP6V0A1Q93050 837 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 OLFM3Q96PB7 478 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 PARVAQ9NVD7 372 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 COG5Q9UP83 839 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 TRIM49D1C9J1S8 452 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 PRPSAP2O60256 369 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 BANF1O75531 89 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 TNNC2P02585 160 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 SRGAP2CP0DJJ0 459 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 YWHABP31946 246 aaKnown RBP13.5□□□□□ -0.25
SHOX2-205ENST00000490689 PSMC1P62191 440 aaKnown RBP13.5□□□□□ -0.25
SHOX2-205ENST00000490689 BNIP1Q12981 228 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 TFDP1Q14186 410 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 RASA2Q15283 850 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 CHI3L2Q15782 390 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 LRRC74BQ6ZQY2 392 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 SLC7A3Q8WY07 619 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 DCLK3Q9C098 648 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 C12orf65Q9H3J6 166 aaKnown RBP13.5□□□□□ -0.25
SHOX2-205ENST00000490689 PRR12Q9ULL5 1215 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 PCDHA3Q9Y5H8 950 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 DDX3YO15523 660 aaKnown RBP13.5□□□□□ -0.25
SHOX2-205ENST00000490689 HNRNPCL1O60812 293 aaKnown RBP13.5□□□□□ -0.25
SHOX2-205ENST00000490689 WEE2P0C1S8 567 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 YARSP54577 528 aaKnown RBP13.5□□□□□ -0.25
SHOX2-205ENST00000490689 ZNF200P98182 395 aaPredicted RBP13.5□□□□□ -0.25
SHOX2-205ENST00000490689 PPP3CAQ08209 521 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 PDCD2Q16342 344 aaPredicted RBP13.5□□□□□ -0.25
SHOX2-205ENST00000490689 MROH9Q5TGP6 573 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 RASGEF1CQ8N431 466 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 LINC00116Q8NCU8 138 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 ZNF384Q8TF68 577 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 PPP1R16BQ96T49 567 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 PAFAH2Q99487 392 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 ADCY3O60266 1144 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 ARP10275 920 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 ETS2P15036 469 aa13.5□□□□□ -0.25
SHOX2-205ENST00000490689 RIPK1Q13546 671 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms