RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ZDHHC7Q9NXF8 308 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 HSPBP1Q9NZL4 362 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 TCHHQ07283 1943 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 DENND4AQ7Z401 1863 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 ABLIM3O94929 683 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 IL18RAPO95256 599 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 VNN2O95498 520 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 OR4Q2P0C623 313 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 ALADP13716 330 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 NUCB2P80303 420 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 TFAMQ00059 246 aaKnown RBP19.62■□□□□ 0.73
COL9A3-214ENST00000490398 BMT2Q1RMZ1 405 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 PPM1LQ5SGD2 360 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 LIN9Q5TKA1 542 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 CCDC149Q6ZUS6 474 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 STXBP4Q6ZWJ1 553 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 TDRD5Q8NAT2 981 aaKnown RBP19.62■□□□□ 0.73
COL9A3-214ENST00000490398 MYADMQ96S97 322 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 TMEM209Q96SK2 561 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 C1QTNF1Q9BXJ1 281 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 RHOBTB2Q9BYZ6 727 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 HCFC1R1Q9NWW0 138 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 LIMD1Q9UGP4 676 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 DPP7Q9UHL4 492 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 NR2E1Q9Y466 385 aa19.62■□□□□ 0.73
COL9A3-214ENST00000490398 CLUHO75153 1309 aa19.61■□□□□ 0.73
COL9A3-214ENST00000490398 H7C4K7 107 aa19.61■□□□□ 0.73
COL9A3-214ENST00000490398 LDHAP00338 332 aaKnown RBP19.61■□□□□ 0.73
COL9A3-214ENST00000490398 CDR1P51861 262 aa19.61■□□□□ 0.73
COL9A3-214ENST00000490398 KRBA2Q6ZNG9 492 aa19.61■□□□□ 0.73
COL9A3-214ENST00000490398 GRASPQ7Z6J2 395 aaPredicted RBP19.61■□□□□ 0.73
COL9A3-214ENST00000490398 C1orf127Q8N9H9 656 aa19.61■□□□□ 0.73
COL9A3-214ENST00000490398 RDH13Q8NBN7 331 aa19.61■□□□□ 0.73
COL9A3-214ENST00000490398 APPL2Q8NEU8 664 aa19.61■□□□□ 0.73
COL9A3-214ENST00000490398 ST13P5Q8NFI4 369 aaPredicted RBP19.61■□□□□ 0.73
COL9A3-214ENST00000490398 OR5B17Q8NGF7 314 aa19.61■□□□□ 0.73
COL9A3-214ENST00000490398 PIDD1Q9HB75 910 aa19.61■□□□□ 0.73
COL9A3-214ENST00000490398 OAZ2O95190 189 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 ITGB3P05106 788 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 CYP2J2P51589 502 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 ZXDAP98168 799 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 YWHAHQ04917 246 aaPredicted RBP19.6■□□□□ 0.73
COL9A3-214ENST00000490398 PTPN21Q16825 1174 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 TMEM31Q5JXX7 168 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 ZNF280DQ6N043 979 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 ELMSAN1Q6PJG2 1045 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 RNF19BQ6ZMZ0 732 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 ZDHHC14Q8IZN3 488 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 ZNF461Q8TAF7 563 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 EDAQ92838 391 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 RTP3Q9BQQ7 232 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 GZF1Q9H116 711 aaPredicted RBP19.6■□□□□ 0.73
COL9A3-214ENST00000490398 USP25Q9UHP3 1055 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 USTQ9Y2C2 406 aa19.6■□□□□ 0.73
COL9A3-214ENST00000490398 MTCL1Q9Y4B5 1905 aaKnown RBP19.59■□□□□ 0.73
COL9A3-214ENST00000490398 UBE4BO95155 1302 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 NRG2O14511 850 aaPredicted RBP19.59■□□□□ 0.73
COL9A3-214ENST00000490398 GPR37L1O60883 481 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 ZNF202O95125 648 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 RPN1P04843 607 aaKnown RBP19.59■□□□□ 0.73
COL9A3-214ENST00000490398 POLR2BP30876 1174 aaKnown RBP19.59■□□□□ 0.73
COL9A3-214ENST00000490398 DPYDQ12882 1025 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 POTEHQ6S545 545 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 CYP26C1Q6V0L0 522 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 MTMR12Q9C0I1 747 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 CRISPLD1Q9H336 500 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 EXOC1Q9NV70 894 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 SIX4Q9UIU6 781 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 POLIQ9UNA4 740 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 AGAP1Q9UPQ3 857 aa19.59■□□□□ 0.73
COL9A3-214ENST00000490398 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.59■□□□□ 0.73
COL9A3-214ENST00000490398 SCN1AP35498 2009 aa19.58■□□□□ 0.73
COL9A3-214ENST00000490398 ZNF233A6NK53 670 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 CYB561D2O14569 222 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 HNRNPA1P09651 372 aaKnown RBP eCLIP19.58■□□□□ 0.72
COL9A3-214ENST00000490398 ATF2P15336 505 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 TYMPP19971 482 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 TAF6P49848 677 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 KNOP1Q1ED39 458 aaKnown RBP19.58■□□□□ 0.72
COL9A3-214ENST00000490398 OVOS1Q6IE37 1185 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 GET4Q7L5D6 327 aaPredicted RBP19.58■□□□□ 0.72
COL9A3-214ENST00000490398 NT5DC4Q86YG4 428 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 OR10T2Q8NGX3 314 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 ITFG1Q8TB96 612 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 PLEKHO2Q8TD55 490 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 RSAD2Q8WXG1 361 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 PGLYRP2Q96PD5 576 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 CYP4F11Q9HBI6 524 aa19.58■□□□□ 0.72
COL9A3-214ENST00000490398 DNMT3BQ9UBC3 853 aaKnown RBP19.58■□□□□ 0.72
COL9A3-214ENST00000490398 ODC1P11926 461 aa19.57■□□□□ 0.72
COL9A3-214ENST00000490398 CPB1P15086 417 aa19.57■□□□□ 0.72
COL9A3-214ENST00000490398 HOXA9P31269 272 aa19.57■□□□□ 0.72
COL9A3-214ENST00000490398 GBP2P32456 591 aaPredicted RBP19.57■□□□□ 0.72
COL9A3-214ENST00000490398 ADCY1Q08828 1119 aa19.57■□□□□ 0.72
COL9A3-214ENST00000490398 SNRNP35Q16560 246 aaKnown RBP19.57■□□□□ 0.72
COL9A3-214ENST00000490398 UVSSAQ2YD98 709 aa19.57■□□□□ 0.72
COL9A3-214ENST00000490398 WSCD1Q658N2 575 aa19.57■□□□□ 0.72
COL9A3-214ENST00000490398 OTOP3Q7RTS5 596 aa19.57■□□□□ 0.72
COL9A3-214ENST00000490398 USP37Q86T82 979 aa19.57■□□□□ 0.72
COL9A3-214ENST00000490398 TCEAL8Q8IYN2 117 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms