RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CLTAP09496 248 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 OR4Q2P0C623 313 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 MYL4P12829 197 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 MARCKSP29966 332 aaPredicted RBP13.5□□□□□ -0.25
CPSF3-204ENST00000489403 AARSP49588 968 aaKnown RBP eCLIP13.5□□□□□ -0.25
CPSF3-204ENST00000489403 GUCY2FP51841 1108 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 EPHA5P54756 1037 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 ZBTB6Q15916 424 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 TSSK4Q6SA08 328 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 MAP4K3Q8IVH8 894 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 ZNF687Q8N1G0 1237 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 ZBTB44Q8NCP5 570 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 LRRC15Q8TF66 581 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 NELL1Q92832 810 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 KCNN1Q92952 543 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 BICD1Q96G01 975 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 BORCS6Q96GS4 357 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 CDK5RAP3Q96JB5 506 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 PGLYRP2Q96PD5 576 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 TRMT61BQ9BVS5 477 aaKnown RBP13.5□□□□□ -0.25
CPSF3-204ENST00000489403 ZNF334Q9HCZ1 680 aaPredicted RBP13.5□□□□□ -0.25
CPSF3-204ENST00000489403 ASAH2Q9NR71 780 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 MAFFQ9ULX9 164 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 UBQLN1Q9UMX0 589 aaKnown RBP13.5□□□□□ -0.25
CPSF3-204ENST00000489403 NDRG2Q9UN36 371 aaKnown RBP13.5□□□□□ -0.25
CPSF3-204ENST00000489403 MRPS17Q9Y2R5 130 aaKnown RBP13.5□□□□□ -0.25
CPSF3-204ENST00000489403 KIF3AQ9Y496 699 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 TSC2P49815 1807 aa13.5□□□□□ -0.25
CPSF3-204ENST00000489403 LACTBL1A8MY62 500 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 H0YCG3 227 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 FAM189A1O60320 539 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 LILRB5O75023 590 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 OAZ2O95190 189 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 PSMC3P17980 439 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 CYP3A5P20815 502 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 GJB2P29033 226 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 GDI1P31150 447 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 VIPR2P41587 438 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 LIG4P49917 911 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 PPP2R3AQ06190 1150 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 TEAD2Q15562 447 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 ARL6IP4Q66PJ3 421 aaKnown RBP13.49□□□□□ -0.25
CPSF3-204ENST00000489403 HAUS6Q7Z4H7 955 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 TMC8Q8IU68 726 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 LEMD2Q8NC56 503 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 SHKBP1Q8TBC3 707 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 ZSCAN18Q8TBC5 510 aaPredicted RBP13.49□□□□□ -0.25
CPSF3-204ENST00000489403 DEPDC1BQ8WUY9 529 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 SMARCD2Q92925 531 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 IRF7Q92985 503 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 REEP2Q9BRK0 252 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 LRRC3Q9BY71 257 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 DNAJC25Q9H1X3 360 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 CRISPLD1Q9H336 500 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 TRPV4Q9HBA0 871 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 ZSCAN32Q9NX65 697 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 ODF2LQ9ULJ1 636 aa13.49□□□□□ -0.25
CPSF3-204ENST00000489403 OTOGLQ3ZCN5 2332 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 ANK1P16157 1881 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 K7ENM7 598 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 MAN2B1O00754 1011 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 PPEF2O14830 753 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 PIGRP01833 764 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 MTAPQ13126 283 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 RABEP1Q15276 862 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 ENOX2Q16206 610 aaKnown RBP13.48□□□□□ -0.25
CPSF3-204ENST00000489403 DSTYKQ6XUX3 929 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 ATRIPQ8WXE1 791 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 FAM3CQ92520 227 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 TMX3Q96JJ7 454 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 OXCT2Q9BYC2 517 aaPredicted RBP13.48□□□□□ -0.25
CPSF3-204ENST00000489403 EPC1Q9H2F5 836 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 CHRDQ9H2X0 955 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 TRPV5Q9NQA5 729 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 TBX20Q9UMR3 447 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.48□□□□□ -0.25
CPSF3-204ENST00000489403 ZNF292O60281 2723 aa13.48□□□□□ -0.25
CPSF3-204ENST00000489403 EP300Q09472 2414 aaPredicted RBP13.48□□□□□ -0.25
CPSF3-204ENST00000489403 NUP210Q8TEM1 1887 aaPredicted RBP13.47□□□□□ -0.25
CPSF3-204ENST00000489403 A0A1W2PRU2 124 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 MED19A0JLT2 244 aaPredicted RBP13.47□□□□□ -0.25
CPSF3-204ENST00000489403 MTMR11A4FU01 709 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 OR6C75A6NL08 312 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 HEPACAM2A8MVW5 462 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 H3BQV1 296 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 ARNTLO00327 626 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 ZNF263O14978 683 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 HNRNPDLO14979 420 aaKnown RBP13.47□□□□□ -0.25
CPSF3-204ENST00000489403 OGTO15294 1046 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 XPOTO43592 962 aaKnown RBP13.47□□□□□ -0.25
CPSF3-204ENST00000489403 CD2BP2O95400 341 aaKnown RBP13.47□□□□□ -0.25
CPSF3-204ENST00000489403 ADRB2P07550 413 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 TDGF1P13385 188 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 ZNF131P52739 623 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 DUSP4Q13115 394 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 GPR17Q13304 367 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 PUM1Q14671 1186 aaKnown RBP eCLIP13.47□□□□□ -0.25
CPSF3-204ENST00000489403 KYAT1Q16773 422 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 SPATA1Q5VX52 437 aa13.47□□□□□ -0.25
CPSF3-204ENST00000489403 SLC39A4Q6P5W5 647 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms