RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	POLR2D	O15514	142 aa	Known RBP	9.58	□□□□□ -0.88
USP4-213	ENST00000488520	LRRN2	O75325	713 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	SOD2	P04179	222 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	SP9	P0CG40	484 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	SPATA31C1	P0DKV0	1188 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	SRF	P11831	508 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	GLUD2	P49448	558 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	CLN3	Q13286	438 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	KARS	Q15046	597 aa	Known RBP	9.58	□□□□□ -0.88
USP4-213	ENST00000488520	UBXN11	Q5T124	520 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	RESP18	Q5W5W9	173 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	ANO5	Q75V66	913 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	MRPL10	Q7Z7H8	261 aa	Known RBP	9.58	□□□□□ -0.88
USP4-213	ENST00000488520	FSIP1	Q8NA03	581 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	CMAS	Q8NFW8	434 aa	Predicted RBP	9.58	□□□□□ -0.88
USP4-213	ENST00000488520	TCP11	Q8WWU5	503 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	RSPH1	Q8WYR4	309 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	RABGGTA	Q92696	567 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	STAM	Q92783	540 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	TMEM143	Q96AN5	459 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	TMEM175	Q9BSA9	504 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	HERC2P3	Q9BVR0	1158 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	APOL6	Q9BWW8	343 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	FOXQ1	Q9C009	403 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	SEMA4A	Q9H3S1	761 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	CUEDC2	Q9H467	287 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	MIOS	Q9NXC5	875 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	KANSL3	Q9P2N6	904 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	USP25	Q9UHP3	1055 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	HOOK1	Q9UJC3	728 aa	Known RBP	9.58	□□□□□ -0.88
USP4-213	ENST00000488520	KCNH3	Q9ULD8	1083 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	SIT1	Q9Y3P8	196 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	COL4A3BP	Q9Y5P4	624 aa		9.58	□□□□□ -0.88
USP4-213	ENST00000488520	NCOR2	Q9Y618	2525 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520		A0A087WWV3	80 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520		A0A1B0GVL5	298 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520		A0A1W2PQ27	194 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520		A0A1W2PQ64	194 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520		A0A1W2PQD8	194 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520		E9PMD0	336 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	GAS2	O43903	313 aa	Known RBP	9.57	□□□□□ -0.88
USP4-213	ENST00000488520	PLA2G4B	P0C869	781 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	ITGA4	P13612	1032 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	RPL17	P18621	184 aa	Known RBP	9.57	□□□□□ -0.88
USP4-213	ENST00000488520	PTMS	P20962	102 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	SYK	P43405	635 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	INSM1	Q01101	510 aa	Predicted RBP	9.57	□□□□□ -0.88
USP4-213	ENST00000488520	GRIN1	Q05586	938 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	USP4	Q13107	963 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	HYI	Q5T013	277 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	AXDND1	Q5T1B0	1012 aa	Predicted RBP	9.57	□□□□□ -0.88
USP4-213	ENST00000488520	KIAA0319	Q5VV43	1072 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	ELMSAN1	Q6PJG2	1045 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	DCLRE1A	Q6PJP8	1040 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	COLGALT2	Q8IYK4	626 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	PRPF31	Q8WWY3	499 aa	Known RBP	9.57	□□□□□ -0.88
USP4-213	ENST00000488520	CCDC47	Q96A33	483 aa	Known RBP	9.57	□□□□□ -0.88
USP4-213	ENST00000488520	DHX58	Q96C10	678 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	ZNF707	Q96C28	371 aa	Predicted RBP	9.57	□□□□□ -0.88
USP4-213	ENST00000488520	CPB2	Q96IY4	423 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	CHAMP1	Q96JM3	812 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	GAD1	Q99259	594 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	RPP25	Q9BUL9	199 aa	Known RBP	9.57	□□□□□ -0.88
USP4-213	ENST00000488520	BHMT2	Q9H2M3	363 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	ARHGEF3	Q9NR81	526 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	EPS15L1	Q9UBC2	864 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	STK17A	Q9UEE5	414 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	STK39	Q9UEW8	545 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	HES2	Q9Y543	173 aa		9.57	□□□□□ -0.88
USP4-213	ENST00000488520	MAP1B	P46821	2468 aa	Known RBP	9.57	□□□□□ -0.88
USP4-213	ENST00000488520	CNTNAP2	Q9UHC6	1331 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	ARL5C	A6NH57	179 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	ZBTB39	O15060	712 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	ASAP2	O43150	1006 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	LAMP2	P13473	410 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	GLUL	P15104	373 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	PLCG1	P19174	1290 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	HOXA11	P31270	313 aa	Predicted RBP	9.56	□□□□□ -0.88
USP4-213	ENST00000488520	MLH1	P40692	756 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	SCNN1G	P51170	649 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	UBE2H	P62256	183 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	LAMTOR4	Q0VGL1	99 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	PUM1	Q14671	1186 aa	Known RBP eCLIP	9.56	□□□□□ -0.88
USP4-213	ENST00000488520	OXLD1	Q5BKU9	147 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	ZC3H14	Q6PJT7	736 aa	Known RBP	9.56	□□□□□ -0.88
USP4-213	ENST00000488520	SHC4	Q6S5L8	630 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	MAEA	Q7L5Y9	396 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	SRGAP1	Q7Z6B7	1085 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	C1orf210	Q8IVY1	113 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	SYT2	Q8N9I0	419 aa	Predicted RBP	9.56	□□□□□ -0.88
USP4-213	ENST00000488520	RNF149	Q8NC42	400 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	SMG8	Q8ND04	991 aa	Known RBP	9.56	□□□□□ -0.88
USP4-213	ENST00000488520	CNNM3	Q8NE01	707 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	MCPH1	Q8NEM0	835 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	LARP4B	Q92615	738 aa	Known RBP	9.56	□□□□□ -0.88
USP4-213	ENST00000488520	RAD54L	Q92698	747 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	IFT74	Q96LB3	600 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	MMTAG2	Q9BU76	263 aa	Known RBP	9.56	□□□□□ -0.88
USP4-213	ENST00000488520	TIPIN	Q9BVW5	301 aa		9.56	□□□□□ -0.88
USP4-213	ENST00000488520	EIF2A	Q9BY44	585 aa	Known RBP	9.56	□□□□□ -0.88

Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms