RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 HAUS5O94927 633 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 TTLL1O95922 423 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 CD1AP06126 327 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 SLC6A9P48067 706 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 MALLQ13021 153 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 TKFCQ3LXA3 575 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 KCNK18Q7Z418 384 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 TECPR1Q7Z6L1 1165 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 CLRN3Q8NCR9 226 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 ORAI2Q96SN7 254 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 DMRT3Q9NQL9 472 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 CTTNBP2NLQ9P2B4 639 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 ZNF580Q9UK33 172 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 PLAAQ9Y263 795 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 RUVBL1Q9Y265 456 aaKnown RBP4.7□□□□□ -1.66
SMC4-220ENST00000488017 FAM171A2A8MVW0 826 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 NEMP1O14524 444 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 KIAA0391O15091 583 aaKnown RBP4.69□□□□□ -1.66
SMC4-220ENST00000488017 TKTP29401 623 aaKnown RBP4.69□□□□□ -1.66
SMC4-220ENST00000488017 ANXA11P50995 505 aaKnown RBP4.69□□□□□ -1.66
SMC4-220ENST00000488017 ATP8B2P98198 1209 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 CREMQ03060 361 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 ZNF844Q08AG5 666 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 LAMB3Q13751 1172 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 HLXQ14774 488 aaPredicted RBP4.69□□□□□ -1.66
SMC4-220ENST00000488017 SEPT2Q15019 361 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 CD300EQ496F6 205 aaPredicted RBP4.69□□□□□ -1.66
SMC4-220ENST00000488017 RUSC1-AS1Q66K80 236 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 AWAT2Q6E213 333 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 ADGRG5Q8IZF4 528 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 APPBP2Q92624 585 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 MFSD3Q96ES6 412 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 PBKQ96KB5 322 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 QRSL1Q9H0R6 528 aaKnown RBP4.69□□□□□ -1.66
SMC4-220ENST00000488017 MANSC1Q9H8J5 431 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 ANLNQ9NQW6 1124 aa4.69□□□□□ -1.66
SMC4-220ENST00000488017 TARM1B6A8C7 271 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 PPEF2O14830 753 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 INSIG1O15503 277 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 AMY1AP04745 511 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 GSPT1P15170 499 aaKnown RBP4.68□□□□□ -1.66
SMC4-220ENST00000488017 PPP3CBP16298 524 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 DDCP20711 480 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 RAPGEF1Q13905 1077 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 DHCR24Q15392 516 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 TMEM119Q4V9L6 283 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 YTHDF3Q7Z739 585 aaKnown RBP4.68□□□□□ -1.66
SMC4-220ENST00000488017 B3GALNT2Q8NCR0 500 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 CCHCR1Q8TD31 782 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 SNX19Q92543 992 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 USP7Q93009 1102 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 RNPC3Q96LT9 517 aaKnown RBP4.68□□□□□ -1.66
SMC4-220ENST00000488017 TLR10Q9BXR5 811 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 ZSWIM4Q9H7M6 989 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 SERGEFQ9UGK8 458 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 PCDHB1Q9Y5F3 818 aa4.68□□□□□ -1.66
SMC4-220ENST00000488017 E7ENX8 843 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 H3BNC9 293 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 PPP6CO00743 305 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 ZEB2O60315 1214 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 SUN1O94901 812 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 HNRNPCP07910 306 aaKnown RBP eCLIP4.67□□□□□ -1.66
SMC4-220ENST00000488017 DRD4P21917 467 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 POLGP54098 1239 aaPredicted RBP4.67□□□□□ -1.66
SMC4-220ENST00000488017 TAP2Q03519 686 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 PREPLQ4J6C6 727 aaPredicted RBP4.67□□□□□ -1.66
SMC4-220ENST00000488017 ZNF66Q6ZN08 573 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 LEO1Q8WVC0 666 aaPredicted RBP4.67□□□□□ -1.66
SMC4-220ENST00000488017 LMBR1Q8WVP7 490 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 ALG8Q9BVK2 526 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 C11orf54Q9H0W9 315 aaPredicted RBP4.67□□□□□ -1.66
SMC4-220ENST00000488017 IFT22Q9H7X7 185 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 VSX1Q9NZR4 365 aaPredicted RBP4.67□□□□□ -1.66
SMC4-220ENST00000488017 CDYLQ9Y232 598 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 ADGRA2Q96PE1 1338 aa4.67□□□□□ -1.66
SMC4-220ENST00000488017 CCDC195A0A1B0GUA6 201 aa4.66□□□□□ -1.66
SMC4-220ENST00000488017 CYSRT1A8MQ03 144 aa4.66□□□□□ -1.66
SMC4-220ENST00000488017 VWC2LB2RUY7 222 aa4.66□□□□□ -1.66
SMC4-220ENST00000488017 CCT8P50990 548 aa4.66□□□□□ -1.66
SMC4-220ENST00000488017 SLC5A3P53794 718 aa4.66□□□□□ -1.66
SMC4-220ENST00000488017 CTXN1P60606 82 aa4.66□□□□□ -1.66
SMC4-220ENST00000488017 PROSER3Q2NL68 480 aa4.66□□□□□ -1.66
SMC4-220ENST00000488017 SLC18B1Q6NT16 456 aa4.66□□□□□ -1.66
SMC4-220ENST00000488017 TMPRSS9Q7Z410 1059 aa4.66□□□□□ -1.66
SMC4-220ENST00000488017 ZGPATQ8N5A5 531 aaKnown RBP4.66□□□□□ -1.66
SMC4-220ENST00000488017 HMCESQ96FZ2 354 aa4.66□□□□□ -1.66
SMC4-220ENST00000488017 MYBBP1AQ9BQG0 1328 aaKnown RBP4.66□□□□□ -1.66
SMC4-220ENST00000488017 GOLGA8AA7E2F4 631 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 AGFG2O95081 481 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 TOP3BO95985 862 aaKnown RBP4.65□□□□□ -1.67
SMC4-220ENST00000488017 SNHG28P0DPA3 235 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 MPGP29372 298 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 SLC6A4P31645 630 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 NR4A2P43354 598 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 HNRNPMP52272 730 aaKnown RBP eCLIP4.65□□□□□ -1.67
SMC4-220ENST00000488017 DALRD3Q5D0E6 543 aaKnown RBP4.65□□□□□ -1.67
SMC4-220ENST00000488017 PLAC9Q5JTB6 97 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 CEP85Q6P2H3 762 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 KRT73Q86Y46 540 aa4.65□□□□□ -1.67
SMC4-220ENST00000488017 CAMKK1Q8N5S9 505 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms