RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 IGSF9Q9P2J2 1179 aa7.54□□□□□ -1.2
HDAC3-209ENST00000486618 EVLQ9UI08 416 aaPredicted RBP7.54□□□□□ -1.2
HDAC3-209ENST00000486618 CDH22Q9UJ99 828 aa7.54□□□□□ -1.2
HDAC3-209ENST00000486618 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.54□□□□□ -1.2
HDAC3-209ENST00000486618 MRPS23Q9Y3D9 190 aaKnown RBP7.54□□□□□ -1.2
HDAC3-209ENST00000486618 IRAK3Q9Y616 596 aa7.54□□□□□ -1.2
HDAC3-209ENST00000486618 NCOR2Q9Y618 2525 aa7.54□□□□□ -1.2
HDAC3-209ENST00000486618 SPTBN2O15020 2390 aa7.54□□□□□ -1.2
HDAC3-209ENST00000486618 ACACBO00763 2458 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 IGKV6D-21A0A0A0MT36 114 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.53□□□□□ -1.2
HDAC3-209ENST00000486618 MED19A0JLT2 244 aaPredicted RBP7.53□□□□□ -1.2
HDAC3-209ENST00000486618 MAGEB2O15479 319 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 PI15O43692 258 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 KIF5CO60282 957 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 MMP20O60882 483 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 CYP21A2P08686 494 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 NPR3P17342 541 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 TMOD1P28289 359 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 PBX3P40426 434 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 POLGP54098 1239 aaPredicted RBP7.53□□□□□ -1.2
HDAC3-209ENST00000486618 RAC1P63000 192 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 UBE2SQ16763 222 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 CEP55Q53EZ4 464 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 ALFQ53S48 1182 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 MIS18BP1Q6P0N0 1132 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 CABP7Q86V35 215 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 CHD1LQ86WJ1 897 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 SKAP1Q86WV1 359 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 ECHDC2Q86YB7 292 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 CKAP2LQ8IYA6 745 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 KIAA2013Q8IYS2 634 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 ZNF654Q8IZM8 581 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 VPS52Q8N1B4 723 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 METTL13Q8N6R0 699 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 C12orf76Q8N812 135 aaPredicted RBP7.53□□□□□ -1.2
HDAC3-209ENST00000486618 RNF169Q8NCN4 708 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 IGDCC4Q8TDY8 1250 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 RUFY2Q8WXA3 655 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 MAP7D2Q96T17 732 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 TSPY26PQ9H489 355 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 SFXN1Q9H9B4 322 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 ZNF302Q9NR11 478 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 CHST12Q9NRB3 414 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 DACT1Q9NYF0 836 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 WNT16Q9UBV4 365 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 DUSP12Q9UNI6 340 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 CEP131Q9UPN4 1083 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 CACNA1GO43497 2377 aa7.53□□□□□ -1.2
HDAC3-209ENST00000486618 CACNA1IQ9P0X4 2223 aa7.52□□□□□ -1.2
HDAC3-209ENST00000486618 A0A0U1RQF3 1178 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 CCDC69A6NI79 296 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 E7EWF7 191 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 COQ9O75208 318 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 GPR32O75388 356 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 VTNP04004 478 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 CALM1P0DP23 149 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 CALM2P0DP24 149 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 CALM3P0DP25 149 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 ARP10275 920 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 CTSAP10619 480 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 EPCAMP16422 314 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 SOX18P35713 384 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 ZNF76P36508 570 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 PIK3CAP42336 1068 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 METAP2P50579 478 aaKnown RBP eCLIP7.52□□□□□ -1.21
HDAC3-209ENST00000486618 BCAR1P56945 870 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 EXOSC10Q01780 885 aaKnown RBP7.52□□□□□ -1.21
HDAC3-209ENST00000486618 GRAMD1BQ3KR37 738 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 SWSAP1Q6NVH7 229 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 SHISA2Q6UWI4 295 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 ABHD15Q6UXT9 468 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 TMC5Q6UXY8 1006 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 NFXL1Q6ZNB6 911 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 GPR149Q86SP6 731 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 DDX53Q86TM3 631 aaKnown RBP7.52□□□□□ -1.21
HDAC3-209ENST00000486618 FMR1NBQ8N0W7 255 aaPredicted RBP7.52□□□□□ -1.21
HDAC3-209ENST00000486618 SRBD1Q8N5C6 995 aaKnown RBP7.52□□□□□ -1.21
HDAC3-209ENST00000486618 CYP2W1Q8TAV3 490 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 HELQQ8TDG4 1101 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 SLC22A17Q8WUG5 538 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 RUBCNQ92622 972 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 TTC9Q92623 222 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 BORCS6Q96GS4 357 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 PPP1R16BQ96T49 567 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 SMG9Q9H0W8 520 aaKnown RBP7.52□□□□□ -1.21
HDAC3-209ENST00000486618 ZBP1Q9H171 429 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 RWDD1Q9H446 243 aaPredicted RBP7.52□□□□□ -1.21
HDAC3-209ENST00000486618 KCNK12Q9HB15 430 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 AGO4Q9HCK5 861 aaKnown RBP7.52□□□□□ -1.21
HDAC3-209ENST00000486618 TPSG1Q9NRR2 321 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 RNF19AQ9NV58 838 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 STK39Q9UEW8 545 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 INPP5FQ9Y2H2 1132 aa7.52□□□□□ -1.21
HDAC3-209ENST00000486618 FANCMQ8IYD8 2048 aa7.51□□□□□ -1.21
HDAC3-209ENST00000486618 C9orf172C9J069 976 aa7.51□□□□□ -1.21
HDAC3-209ENST00000486618 NT5C1B-RDH14C9J2C7 533 aa7.51□□□□□ -1.21
HDAC3-209ENST00000486618 PRRT4C9JH25 899 aa7.51□□□□□ -1.21
HDAC3-209ENST00000486618 DDX39AO00148 427 aaKnown RBP7.51□□□□□ -1.21
HDAC3-209ENST00000486618 MEIS1O00470 390 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms