RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ZNF667Q5HYK9 610 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 SPOPLQ6IQ16 392 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 CD300LGQ6UXG3 332 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 DSTYKQ6XUX3 929 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 CLP1Q92989 425 aaKnown RBP13.15□□□□□ -0.3
SDC1-206ENST00000482879 TATDN2Q93075 761 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 NT5C1BQ96P26 610 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 PBX4Q9BYU1 374 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 APOBEC3GQ9HC16 384 aaKnown RBP13.15□□□□□ -0.3
SDC1-206ENST00000482879 SPG21Q9NZD8 308 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 NXF1Q9UBU9 619 aaKnown RBP13.15□□□□□ -0.3
SDC1-206ENST00000482879 YBX2Q9Y2T7 364 aaKnown RBP13.15□□□□□ -0.3
SDC1-206ENST00000482879 PCDHB12Q9Y5F1 795 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 A0A1W2PQC6 194 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 CA3P07451 260 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 LINC00271P0C7V0 271 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 P4HA1P13674 534 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 PAX3P23760 479 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 BMPR1AP36894 532 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 BRCC3P46736 316 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 KLK7P49862 253 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 ZNF75DP51815 510 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 TNNC1P63316 161 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 TIGD5Q53EQ6 642 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 TRIM65Q6PJ69 517 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 SLC39A11Q8N1S5 342 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 IGSF21Q96ID5 467 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 SENP8Q96LD8 212 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 NKX2-4Q9H2Z4 354 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 VRTNQ9H8Y1 702 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 MARCH5Q9NX47 278 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 ADAM28Q9UKQ2 775 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 POLIQ9UNA4 740 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 SIK3Q9Y2K2 1263 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 RWDD3Q9Y3V2 267 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 SNX9Q9Y5X1 595 aa13.14□□□□□ -0.31
SDC1-206ENST00000482879 VWA8A3KMH1 1905 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 I3L4J1 428 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 CYB561D2O14569 222 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 TRAPPC3O43617 180 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 ARHGEF15O94989 841 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 CTNNB1P35222 781 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 PPM1AP35813 382 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 PBX1P40424 430 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 AARSP49588 968 aaKnown RBP eCLIP13.13□□□□□ -0.31
SDC1-206ENST00000482879 MRE11P49959 708 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 APBA1Q02410 837 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 PHLDB3Q6NSJ2 640 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 DPY19L2P1Q6NXN4 242 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 FUT10Q6P4F1 479 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 TMEM173Q86WV6 379 aaPredicted RBP13.13□□□□□ -0.31
SDC1-206ENST00000482879 ARHGEF19Q8IW93 802 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 NEK11Q8NG66 645 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 BCL7CQ8WUZ0 217 aaPredicted RBP13.13□□□□□ -0.31
SDC1-206ENST00000482879 TMEM169Q96HH4 297 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 SUSD3Q96L08 255 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 TGS1Q96RS0 853 aaKnown RBP13.13□□□□□ -0.31
SDC1-206ENST00000482879 MMS19Q96T76 1030 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 NIF3L1Q9GZT8 377 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 SIX2Q9NPC8 291 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 UBE2TQ9NPD8 197 aaPredicted RBP13.13□□□□□ -0.31
SDC1-206ENST00000482879 PLCB1Q9NQ66 1216 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 FAM207AQ9NSI2 230 aaPredicted RBP13.13□□□□□ -0.31
SDC1-206ENST00000482879 GDAP2Q9NXN4 497 aa13.13□□□□□ -0.31
SDC1-206ENST00000482879 COLQQ9Y215 455 aaPredicted RBP13.13□□□□□ -0.31
SDC1-206ENST00000482879 PLXNA4Q9HCM2 1894 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 A0A1W2PPC1 479 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 HUS1O60921 280 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 ADCY5O95622 1261 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 SMAD3P84022 425 aaKnown RBP13.12□□□□□ -0.31
SDC1-206ENST00000482879 TAP1Q03518 808 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 KRT17Q04695 432 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 ELAVL2Q12926 359 aaKnown RBP13.12□□□□□ -0.31
SDC1-206ENST00000482879 KLHDC7AQ5VTJ3 777 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 GJB7Q6PEY0 223 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 SCARA5Q6ZMJ2 495 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 RRAGAQ7L523 313 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 PPM1KQ8N3J5 372 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 MRFAP1L1Q96HT8 127 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 FAXDC2Q96IV6 333 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 SAMD11Q96NU1 681 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 C17orf80Q9BSJ5 609 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 GPR62Q9BZJ7 368 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 APEX2Q9UBZ4 518 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 MYO7AQ13402 2215 aa13.12□□□□□ -0.31
SDC1-206ENST00000482879 SF3B1O75533 1304 aaKnown RBP eCLIP13.12□□□□□ -0.31
SDC1-206ENST00000482879 ARHGEF37A1IGU5 675 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 M0QZQ0 153 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 FGF18O76093 207 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 NOL4O94818 638 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 RB1P06400 928 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 WEE2P0C1S8 567 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 ODC1P11926 461 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 TBXAS1P24557 533 aaPredicted RBP13.11□□□□□ -0.31
SDC1-206ENST00000482879 DNAJB2P25686 324 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 ASPAP45381 313 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 CDH8P55286 799 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 ERVK-21P61565 698 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 CUL2Q13617 745 aa13.11□□□□□ -0.31
SDC1-206ENST00000482879 SOWAHAQ2M3V2 549 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms