RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 VTI1AQ96AJ9 217 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 TMEM121Q9BTD3 319 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 TDRD3Q9H7E2 651 aaKnown RBP14.24□□□□□ -0.13
USP42-206ENST00000479544 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.24□□□□□ -0.13
USP42-206ENST00000479544 SLC12A6Q9UHW9 1150 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 ZBBXA8MT70 800 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 NOL4O94818 638 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 PTK7Q13308 1070 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 PLA2G4FQ68DD2 849 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 ZNF662Q6ZS27 426 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 ZSWIM2Q8NEG5 633 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 LNX1Q8TBB1 728 aaPredicted RBP14.24□□□□□ -0.13
USP42-206ENST00000479544 DNAJC18Q9H819 358 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 NINJ2Q9NZG7 142 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 PI4KBQ9UBF8 816 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 DPPA5A6NC42 116 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 XPO1O14980 1071 aaKnown RBP14.24□□□□□ -0.13
USP42-206ENST00000479544 SRGAP2CP0DJJ0 459 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 RRP1BQ14684 758 aaKnown RBP14.24□□□□□ -0.13
USP42-206ENST00000479544 NPY5RQ15761 445 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 MROH9Q5TGP6 573 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 INTS5Q6P9B9 1019 aaKnown RBP14.24□□□□□ -0.13
USP42-206ENST00000479544 PALB2Q86YC2 1186 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 POU5F2Q8N7G0 328 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 RBM46Q8TBY0 533 aaKnown RBP14.24□□□□□ -0.13
USP42-206ENST00000479544 RNF34Q969K3 372 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 MCEEQ96PE7 176 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 SENP7Q9BQF6 1050 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 SYT17Q9BSW7 474 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 C12orf65Q9H3J6 166 aaKnown RBP14.24□□□□□ -0.13
USP42-206ENST00000479544 UVRAGQ9P2Y5 699 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 INO80B-WBP1J3KQ70 363 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 K7ERI5 159 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 AIM2O14862 343 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 SLC16A3O15427 465 aaKnown RBP14.23□□□□□ -0.13
USP42-206ENST00000479544 UNC5CO95185 931 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 ORC2Q13416 577 aaPredicted RBP14.23□□□□□ -0.13
USP42-206ENST00000479544 SNRNP35Q16560 246 aaKnown RBP14.23□□□□□ -0.13
USP42-206ENST00000479544 SHISA4Q96DD7 197 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 INO80BQ9C086 356 aaPredicted RBP14.23□□□□□ -0.13
USP42-206ENST00000479544 TSPYL2Q9H2G4 693 aaPredicted RBP14.23□□□□□ -0.13
USP42-206ENST00000479544 PPEF1O14829 653 aaPredicted RBP14.23□□□□□ -0.13
USP42-206ENST00000479544 STK10O94804 968 aaKnown RBP14.23□□□□□ -0.13
USP42-206ENST00000479544 BGNP21810 368 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 SLC12A2P55011 1212 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 ESRRGP62508 458 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 DUPD1Q68J44 220 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 RNF217Q8TC41 542 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 DNAJC19Q96DA6 116 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 RAB6BQ9NRW1 208 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 ADA2Q9NZK5 511 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 MAGEA13PA6NCF6 341 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 O00370 1275 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 MSH4O15457 936 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 PEX5P50542 639 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 EPHA7Q15375 998 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 DLGAP5Q15398 846 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 SEZ6Q53EL9 994 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 LRRC6Q86X45 466 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 MSTO1Q9BUK6 570 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 GANQ9H2C0 597 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 SUDS3Q9H7L9 328 aaPredicted RBP14.23□□□□□ -0.13
USP42-206ENST00000479544 PACSIN3Q9UKS6 424 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 SCAF8Q9UPN6 1271 aaKnown RBP14.23□□□□□ -0.13
USP42-206ENST00000479544 SCINQ9Y6U3 715 aa14.23□□□□□ -0.13
USP42-206ENST00000479544 CST8O60676 142 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 KRT38O76015 456 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 PTPN4P29074 926 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 ALDH1B1P30837 517 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 CASP2P42575 452 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 IGBP1P78318 339 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 GPSM2P81274 684 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 SPOPLQ6IQ16 392 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 C11orf63Q6NUN7 778 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 CRELD2Q6UXH1 353 aaPredicted RBP14.22□□□□□ -0.13
USP42-206ENST00000479544 ANO5Q75V66 913 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 TRIM50Q86XT4 487 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 WWP1Q9H0M0 922 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 LRRC4BQ9NT99 713 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 SENP1Q9P0U3 644 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 BCAP29Q9UHQ4 241 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 H0YIN7 160 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 PPIP5K2O43314 1243 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 CRCPO75575 148 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 RPA3P35244 121 aaPredicted RBP14.22□□□□□ -0.13
USP42-206ENST00000479544 MMP13P45452 471 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 GCLCP48506 637 aaPredicted RBP14.22□□□□□ -0.13
USP42-206ENST00000479544 SH3BGRP55822 239 aaPredicted RBP14.22□□□□□ -0.13
USP42-206ENST00000479544 CHI3L2Q15782 390 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 CEP55Q53EZ4 464 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 ARHGEF19Q8IW93 802 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 GGA2Q9UJY4 613 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 DAGLAQ9Y4D2 1042 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 TRIM49D1C9J1S8 452 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 FECHP22830 423 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 GRIK5Q16478 980 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 LARGE2Q8N3Y3 721 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 FAM71DQ8N9W8 422 aa14.22□□□□□ -0.13
USP42-206ENST00000479544 RBBP8NLQ8NC74 664 aaPredicted RBP14.22□□□□□ -0.13
USP42-206ENST00000479544 CKAP2Q8WWK9 683 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms