RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 GOLGA8AA7E2F4 631 aa4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 IKBKBO14920 756 aa4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 ZEB2O60315 1214 aa4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 HAUS5O94927 633 aa4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 NHLRC4P0CG21 123 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 MYCLP1P12525 358 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 DDCP20711 480 aa4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 DYRK1AQ13627 763 aa4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 CRELD2Q6UXH1 353 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 CLNKQ7Z7G1 428 aa4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 KLHL32Q96NJ5 620 aa4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 APOBEC2Q9Y235 224 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 PCDHGA2Q9Y5H1 932 aa4.73□□□□□ -1.65
CCDC88A-212ENST00000474059 MYBBP1AQ9BQG0 1328 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 MTHFD2P13995 350 aa4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 SCAND1P57086 179 aa4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 RPS7P62081 194 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 SLC10A2Q12908 348 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 TARDBPQ13148 414 aaKnown RBP eCLIP4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 NSUN7Q8NE18 718 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 TOR1AIP2Q8NFQ8 470 aa4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 RFKQ969G6 155 aa4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 CYFIP2Q96F07 1278 aa4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 PGBD1Q96JS3 809 aa4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 ADI1Q9BV57 179 aa4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 C11orf54Q9H0W9 315 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 CCM2LQ9NUG4 571 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 CDYLQ9Y232 598 aa4.72□□□□□ -1.65
CCDC88A-212ENST00000474059 AGFG2O95081 481 aa4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 IGKV2-30P06310 120 aa4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 RHOP08100 348 aa4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 OSMP13725 252 aa4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 DRD4P21917 467 aa4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 SFPQP23246 707 aaKnown RBP eCLIP4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 ANXA11P50995 505 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 FAM180AQ6UWF9 173 aa4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 DPF2Q92785 391 aa4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 RAB24Q969Q5 203 aa4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 FCRL4Q96PJ5 515 aa4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 TTC1Q99614 292 aa4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 SLC45A2Q9UMX9 530 aa4.71□□□□□ -1.66
CCDC88A-212ENST00000474059 CACNA1IQ9P0X4 2223 aa4.7□□□□□ -1.66
CCDC88A-212ENST00000474059 MOSPD3O75425 235 aa4.7□□□□□ -1.66
CCDC88A-212ENST00000474059 NTN1O95631 604 aa4.7□□□□□ -1.66
CCDC88A-212ENST00000474059 CTXN1P60606 82 aa4.7□□□□□ -1.66
CCDC88A-212ENST00000474059 FPGSQ05932 587 aa4.7□□□□□ -1.66
CCDC88A-212ENST00000474059 STRN3Q13033 797 aa4.7□□□□□ -1.66
CCDC88A-212ENST00000474059 TMEM119Q4V9L6 283 aa4.7□□□□□ -1.66
CCDC88A-212ENST00000474059 REPS1Q96D71 796 aa4.7□□□□□ -1.66
CCDC88A-212ENST00000474059 HAPLN3Q96S86 360 aa4.7□□□□□ -1.66
CCDC88A-212ENST00000474059 C14orf119Q9NWQ9 140 aa4.7□□□□□ -1.66
CCDC88A-212ENST00000474059 KAT6AQ92794 2004 aa4.7□□□□□ -1.66
CCDC88A-212ENST00000474059 FAM171A2A8MVW0 826 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 E9PLN8 166 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 GRM6O15303 877 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 ORC4O43929 436 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 HOXB6P17509 224 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 PROSER3Q2NL68 480 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 UTP14CQ5TAP6 766 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 LHFPL2Q6ZUX7 228 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 TECPR1Q7Z6L1 1165 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 NEK8Q86SG6 692 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 CFAP52Q8N1V2 620 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 UBR7Q8N806 425 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 TMIEQ8NEW7 156 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 FBXO41Q8TF61 875 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 RPL36ALQ969Q0 106 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 SLC2A13Q96QE2 648 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 VKORC1Q9BQB6 163 aa4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 ZNF277Q9NRM2 450 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-212ENST00000474059 GCOM1H8Y6P7 765 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 ZNF213O14771 459 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 JUPP14923 745 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 KELP23276 732 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 PTGER1P34995 402 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 GRM1Q13255 1194 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 SUPT20HL1Q3ZLR7 823 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 MORN5Q5VZ52 161 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 IFI44Q8TCB0 444 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 PBKQ96KB5 322 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 BRIP1Q9BX63 1249 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 KLC4Q9NSK0 619 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 DKK3Q9UBP4 350 aa4.68□□□□□ -1.66
CCDC88A-212ENST00000474059 CCDC195A0A1B0GUA6 201 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 TISP43B9A030 160 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 URI1O94763 535 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 TOP3BO95985 862 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 EPHB2P29323 1055 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 WASP42768 502 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 FOXG1P55316 489 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 TUBA4AP68366 448 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 AFAP1L2Q8N4X5 818 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 CAMKK1Q8N5S9 505 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 NLGN4YQ8NFZ3 816 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 NRG4Q8WWG1 115 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 WACQ9BTA9 647 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 QTRT1Q9BXR0 403 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 MANSC1Q9H8J5 431 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 DNAJC28Q9NX36 388 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms