RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	WDR6	Q9NNW5	1121 aa	Known RBP	12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	FAM86C1	Q9NVL1	165 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	DPP3	Q9NY33	737 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	SERTAD1	Q9UHV2	236 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	RCOR1	Q9UKL0	485 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	SORCS3	Q9UPU3	1222 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	UST	Q9Y2C2	406 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	DERA	Q9Y315	318 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	TIMM13	Q9Y5L4	95 aa	Predicted RBP	12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	BACE2	Q9Y5Z0	518 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	MYH10	P35580	1976 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	FRMD3	A2A2Y4	597 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	EIF3D	O15371	548 aa	Known RBP eCLIP	12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	PPP1R37	O75864	691 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	C1R	P00736	705 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	PFKFB1	P16118	471 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	FSHR	P23945	695 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	CASP1	P29466	404 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	LRPAP1	P30533	357 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	SYK	P43405	635 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	TAF6	P49848	677 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	ROR1	Q01973	937 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	SPATA1	Q5VX52	437 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	HS2ST1	Q7LGA3	356 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	ZDHHC14	Q8IZN3	488 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	TMEM130	Q8N3G9	435 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	ANKRD36BP1	Q96IX9	119 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	C7orf25	Q9BPX7	421 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	MFSD1	Q9H3U5	465 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	FBXL21	Q9UKT6	434 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	C2CD2	Q9Y426	696 aa		12.47	□□□□□ -0.41
CPNE1-222	ENST00000473373	ZNF318	Q5VUA4	2279 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	TECTA	O75443	2155 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	UBE4B	O95155	1302 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	ZNF233	A6NK53	670 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	KIAA0391	O15091	583 aa	Known RBP	12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	MEFV	O15553	781 aa	Predicted RBP	12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	EXTL3	O43909	919 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	FAM189A1	O60320	539 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	TNNC2	P02585	160 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	CYP2J2	P51589	502 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	VCP	P55072	806 aa	Known RBP	12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	NUCB2	P80303	420 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	ADCY1	Q08828	1119 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	SIGLEC14	Q08ET2	396 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	BFSP1	Q12934	665 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	CUL4B	Q13620	913 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	UVSSA	Q2YD98	709 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	SV2C	Q496J9	727 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	C9orf57	Q5W0N0	161 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	OVOS1	Q6IE37	1185 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	IQCE	Q6IPM2	695 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	LILRA6	Q6PI73	481 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	CD300LG	Q6UXG3	332 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	NT5DC4	Q86YG4	428 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	GRAMD1C	Q8IYS0	662 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	THEM5	Q8N1Q8	247 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	FSIP1	Q8NA03	581 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	ZNF461	Q8TAF7	563 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	FEZF2	Q8TBJ5	459 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	SENP8	Q96LD8	212 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	PRRX2	Q99811	253 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	CBWD1	Q9BRT8	395 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	FGFBP2	Q9BYJ0	223 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	SLC39A2	Q9NP94	309 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	USP25	Q9UHP3	1055 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	FBXL5	Q9UKA1	691 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	STYXL1	Q9Y6J8	313 aa		12.46	□□□□□ -0.41
CPNE1-222	ENST00000473373	WDR27	A2RRH5	827 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	STK25	O00506	426 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	CYB561D2	O14569	222 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	CLIC2	O15247	247 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	ITGB3	P05106	788 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	SLFN14	P0C7P3	912 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	PAX3	P23760	479 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	CMA1	P23946	247 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	ADSS	P30520	456 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	POLR2B	P30876	1174 aa	Known RBP	12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	HOXA9	P31269	272 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	LILRA4	P59901	499 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	SURF1	Q15526	300 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	ZBTB6	Q15916	424 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	PABPC1L	Q4VXU2	614 aa	Known RBP	12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	TPGS2	Q68CL5	300 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	RSPO2	Q6UXX9	243 aa	Predicted RBP	12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	BRSK2	Q8IWQ3	736 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	UBALD2	Q8IYN6	164 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	CSGALNACT2	Q8N6G5	542 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	RDH13	Q8NBN7	331 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	FAM200A	Q8TCP9	573 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	ATOH1	Q92858	354 aa	Predicted RBP	12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	CHAMP1	Q96JM3	812 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	PGLYRP2	Q96PD5	576 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	FNBP1	Q96RU3	617 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	OXCT2	Q9BYC2	517 aa	Predicted RBP	12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	GDPD2	Q9HCC8	539 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	KIAA1586	Q9HCI6	787 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	DSE	Q9UL01	958 aa		12.45	□□□□□ -0.42
CPNE1-222	ENST00000473373	MRPS23	Q9Y3D9	190 aa	Known RBP	12.45	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms