RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CPB1P15086 417 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 GAP43P17677 238 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 TMEM132DQ14C87 1099 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 FOXD4L6Q3SYB3 417 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 SLFN12LQ6IEE8 588 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 PARM1Q6UWI2 310 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 FOXD4L3Q6VB84 417 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 DSTYKQ6XUX3 929 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 RTL10Q7L3V2 364 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 LINC00301Q8NCQ3 95 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 ING5Q8WYH8 240 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 POMGNT1Q8WZA1 660 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 FGF13Q92913 245 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 FGF14Q92915 247 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 HVCN1Q96D96 273 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 ZNF396Q96N95 335 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 SLC2A4RGQ9NR83 387 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 AGO2Q9UKV8 859 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 ZFP37Q9Y6Q3 630 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 M0QZQ0 153 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 TULP1O00294 542 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 SPTLC2O15270 562 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 PPP1R37O75864 691 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 SEC24AO95486 1093 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 ADRB2P07550 413 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 RHOP08100 348 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 ATF2P15336 505 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 GPC5P78333 572 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 YWHAHQ04917 246 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 ADCY1Q08828 1119 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 KCNA1Q09470 495 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 SPATA1Q5VX52 437 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 PHLDB3Q6NSJ2 640 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 CD302Q8IX05 232 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 FOXQ1Q9C009 403 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 DLGAP2Q9P1A6 1054 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 MRPS23Q9Y3D9 190 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 SIT1Q9Y3P8 196 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 INSL5Q9Y5Q6 135 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 R4GN57 208 aa17.05■□□□□ 0.32
CCDC88B-205ENST00000472524 PTPRZ1P23471 2315 aaPredicted RBP17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 ARHGEF37A1IGU5 675 aa17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 AARSP49588 968 aaKnown RBP eCLIP17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 CASP5P51878 434 aa17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 L1TD1Q5T7N2 865 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 TPGS2Q68CL5 300 aa17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 USP37Q86T82 979 aa17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 NPAS3Q8IXF0 933 aa17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 ACCSQ96QU6 501 aa17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 TSPAN18Q96SJ8 248 aa17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 CORO1BQ9BR76 489 aa17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 PANK4Q9NVE7 773 aa17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 AFF4Q9UHB7 1163 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 EXOC7Q9UPT5 735 aa17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 STYXL1Q9Y6J8 313 aa17.04■□□□□ 0.32
CCDC88B-205ENST00000472524 RIF1Q5UIP0 2472 aaKnown RBP17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 LRRN2O75325 713 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 OR4Q2P0C623 313 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 GLULP15104 373 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 ADSSP30520 456 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 SLC5A9Q2M3M2 681 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 C9orf57Q5W0N0 161 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 RNF19BQ6ZMZ0 732 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 MTSS1LQ765P7 747 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 TCEAL8Q8IYN2 117 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 SYCP3Q8IZU3 236 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 SPRYD3Q8NCJ5 442 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 PGLYRP2Q96PD5 576 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 STRA6Q9BX79 667 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 FGFBP2Q9BYJ0 223 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 ASB7Q9H672 318 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 KCNH3Q9ULD8 1083 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 DERAQ9Y315 318 aa17.03■□□□□ 0.32
CCDC88B-205ENST00000472524 DCHS1Q96JQ0 3298 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 FRMD3A2A2Y4 597 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 PPP6R2O75170 966 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 YEATS4O95619 227 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 ODC1P11926 461 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 CEBPBP17676 345 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 PTPN2P17706 415 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 LILRA4P59901 499 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 TWF1Q12792 350 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 SNW1Q13573 536 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 POSTNQ15063 836 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 OVOS1Q6IE37 1185 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 CRELD2Q6UXH1 353 aaPredicted RBP17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 CCDC65Q8IXS2 484 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 ELMOD1Q8N336 334 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 PJA1Q8NG27 643 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 KCNG4Q8TDN1 519 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 NOC3LQ8WTT2 800 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 DHX58Q96C10 678 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 SAAL1Q96ER3 474 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 MCRS1Q96EZ8 462 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 SENP8Q96LD8 212 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 KXD1Q9BQD3 176 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 OLFML3Q9NRN5 406 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 PCDHB13Q9Y5F0 798 aa17.02■□□□□ 0.32
CCDC88B-205ENST00000472524 WDR87Q6ZQQ6 2873 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms