RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TDRD1Q9BXT4 1180 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 VRTNQ9H8Y1 702 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 MTMR10Q9NXD2 777 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 MAGEA13PA6NCF6 341 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 PABPN1LA6NDY0 278 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 DHX15O43143 795 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 DCTN3O75935 186 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 HSPA1AP0DMV8 641 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 HSPA1BP0DMV9 641 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 GABRB3P28472 473 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 GSTO1P78417 241 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 AP1B1Q10567 949 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 ANKRD35Q8N283 1001 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 GOLM1Q8NBJ4 401 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 FAM81AQ8TBF8 368 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 IFT81Q8WYA0 676 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 SLC35B4Q969S0 331 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 MRRFQ96E11 262 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 CLMNQ96JQ2 1002 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 RIT2Q99578 217 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 TRIM51Q9BSJ1 452 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 DCLK3Q9C098 648 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 USP29Q9HBJ7 922 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 OSGEPQ9NPF4 335 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 TMOD4Q9NZQ9 345 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 MTRF1LQ9UGC7 380 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 DBR1Q9UK59 544 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 CSADQ9Y600 493 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 PNMA6FA0A0J9YX94 578 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 SSC5DA1L4H1 1573 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 MEIS1O00470 390 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 PROSCO94903 275 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 STBD1O95210 358 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 TDP2O95551 362 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 KRT5P13647 590 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 GPC3P51654 580 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 POLR2FP61218 127 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 DEUP1Q05D60 604 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 STRN3Q13033 797 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 PPP2R5CQ13362 524 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 KHDC1Q4VXA5 237 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 C1QTNF12Q5T7M4 302 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 THEMIS2Q5TEJ8 643 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 MAMDC4Q6UXC1 1216 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 BBS12Q6ZW61 710 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 CCDC65Q8IXS2 484 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 SPDL1Q96EA4 605 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 PASKQ96RG2 1323 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 DNALI1O14645 258 aaPredicted RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 KCNK3O14649 394 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 TM9SF1O15321 606 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 CEP104O60308 925 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 HLA-DOAP06340 250 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 SMIM18P0DKX4 95 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 EEF2P13639 858 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 CDR2Q01850 454 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 RASA3Q14644 834 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 SPCS2Q15005 226 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 DCAF17Q5H9S7 520 aaPredicted RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 TRAPPC3LQ5T215 181 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 C3orf67Q6ZVT6 689 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 ENOSF1Q7L5Y1 443 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 CPLX4Q7Z7G2 160 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 MDM1Q8TC05 714 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 TEKT4Q8WW24 435 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 C2CD2Q9Y426 696 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 CHD4Q14839 1912 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 WDR46O15213 610 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 HIP1RO75146 1068 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 FKBP6O75344 327 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 MED24O75448 989 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 TMC4Q7Z404 712 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 TBC1D1Q86TI0 1168 aaPredicted RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 GLYCTKQ8IVS8 523 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 GMCL1P1Q8NEA9 526 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 EXD1Q8NHP7 514 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 PPP1R14CQ8TAE6 165 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 WDR66Q8TBY9 1149 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 UBLCP1Q8WVY7 318 aaPredicted RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 TRPV5Q9NQA5 729 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 CTTNBP2NLQ9P2B4 639 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 GRID1Q9ULK0 1009 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 NAALADL1Q9UQQ1 740 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 TBCAO75347 108 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 MRPL19P49406 292 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 CUL3Q13618 768 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 OTOAQ7RTW8 1153 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 KBTBD6Q86V97 674 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 AHI1Q8N157 1196 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SMYD1Q8NB12 490 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 DIS3LQ8TF46 1054 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 AGAP3Q96P47 875 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF184Q99676 751 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 GORASP1Q9BQQ3 440 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 LTBP4Q8N2S1 1624 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 RGS16O15492 202 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SPAG6O75602 509 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PTPN2P17706 415 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 NR2F2P24468 414 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PRDX6P30041 224 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms