RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 CDH8P55286 799 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 ASTE1Q2TB18 679 aaPredicted RBP10.64□□□□□ -0.71
SF3A1-207ENST00000471342 GLB1LQ6UWU2 654 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 RSPO2Q6UXX9 243 aaPredicted RBP10.64□□□□□ -0.71
SF3A1-207ENST00000471342 GBP6Q6ZN66 633 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 RRAGAQ7L523 313 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 SLC39A11Q8N1S5 342 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 DDX1Q92499 740 aaKnown RBP10.64□□□□□ -0.71
SF3A1-207ENST00000471342 FAXDC2Q96IV6 333 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 LPIN3Q9BQK8 851 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 MRPL45Q9BRJ2 306 aaKnown RBP10.64□□□□□ -0.71
SF3A1-207ENST00000471342 LSM14BQ9BX40 385 aaKnown RBP10.64□□□□□ -0.71
SF3A1-207ENST00000471342 TRIM5Q9C035 493 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 SMYD3Q9H7B4 428 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 APEX2Q9UBZ4 518 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 INPP5FQ9Y2H2 1132 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 CEP290O15078 2479 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 A0A1W2PQJ5 194 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 LINC01553A4QN01 128 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 NT5C1B-RDH14C9J2C7 533 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 I3L4J1 428 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 GABBR2O75899 941 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 CYP11A1P05108 521 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 CFHP08603 1231 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 LMO2P25791 158 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 ATICP31939 592 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 BCAR1P56945 870 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 NOP14P78316 857 aaKnown RBP10.63□□□□□ -0.71
SF3A1-207ENST00000471342 RBP5P82980 135 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 GCNT1Q02742 428 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 INCA1Q0VD86 236 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 LRMPQ12912 555 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 MEA1Q16626 185 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 SGSM1Q2NKQ1 1148 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 PAN2Q504Q3 1202 aaKnown RBP10.63□□□□□ -0.71
SF3A1-207ENST00000471342 SPECC1LQ69YQ0 1117 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 FAM117BQ6P1L5 589 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 DCLRE1AQ6PJP8 1040 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 PAQR9Q6ZVX9 377 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 APBB1IPQ7Z5R6 666 aaPredicted RBP10.63□□□□□ -0.71
SF3A1-207ENST00000471342 CREBRFQ8IUR6 639 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 FAM71AQ8IYT1 594 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 BEST2Q8NFU1 509 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 RSPH1Q8WYR4 309 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 HPDLQ96IR7 371 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 ANKRD36BP1Q96IX9 119 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 SUSD3Q96L08 255 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 DNAJC7Q99615 494 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 RAD9AQ99638 391 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 TMEM175Q9BSA9 504 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 ELOVL4Q9GZR5 314 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 CHST7Q9NS84 486 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 FAM207AQ9NSI2 230 aaPredicted RBP10.63□□□□□ -0.71
SF3A1-207ENST00000471342 CEP72Q9P209 647 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 DNAJC12Q9UKB3 198 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 NR2E3Q9Y5X4 410 aa10.63□□□□□ -0.71
SF3A1-207ENST00000471342 EPOPA6NHQ4 379 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 KPNA7A9QM74 516 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 STX10O60499 249 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 N4BP1O75113 896 aaKnown RBP10.62□□□□□ -0.71
SF3A1-207ENST00000471342 WEE2P0C1S8 567 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 TMEM191BP0C7N4 346 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 ATP2A2P16615 1042 aaKnown RBP10.62□□□□□ -0.71
SF3A1-207ENST00000471342 CHRNB2P17787 502 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 FGFR3P22607 806 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 CASP14P31944 242 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 RAP1GAPP47736 663 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 CUL2Q13617 745 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 DRAP1Q14919 205 aaPredicted RBP10.62□□□□□ -0.71
SF3A1-207ENST00000471342 WSCD1Q658N2 575 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 PDXDC1Q6P996 788 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.62□□□□□ -0.71
SF3A1-207ENST00000471342 LRRTM3Q86VH5 581 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 PDCL2Q8N4E4 241 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 COLGALT1Q8NBJ5 622 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 CACTINQ8WUQ7 758 aaKnown RBP10.62□□□□□ -0.71
SF3A1-207ENST00000471342 TFAP2BQ92481 460 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 TAF4BQ92750 862 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 SENP8Q96LD8 212 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 TMEM209Q96SK2 561 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 SLC9A7Q96T83 725 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 STK33Q9BYT3 514 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 PBX4Q9BYU1 374 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 EDEM3Q9BZQ6 932 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 KCNF1Q9H3M0 494 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 TMEM30AQ9NV96 361 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 AIPL1Q9NZN9 384 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 KANSL3Q9P2N6 904 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 PRKAG2Q9UGJ0 569 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 CITO14578 2027 aa10.62□□□□□ -0.71
SF3A1-207ENST00000471342 C5orf67F2Z3F1 127 aa10.61□□□□□ -0.71
SF3A1-207ENST00000471342 F8VZ95 297 aa10.61□□□□□ -0.71
SF3A1-207ENST00000471342 ZNF263O14978 683 aa10.61□□□□□ -0.71
SF3A1-207ENST00000471342 ADAM12O43184 909 aa10.61□□□□□ -0.71
SF3A1-207ENST00000471342 HOXA2O43364 376 aa10.61□□□□□ -0.71
SF3A1-207ENST00000471342 MFAP3LO75121 409 aa10.61□□□□□ -0.71
SF3A1-207ENST00000471342 CILPO75339 1184 aa10.61□□□□□ -0.71
SF3A1-207ENST00000471342 TACC1O75410 805 aa10.61□□□□□ -0.71
SF3A1-207ENST00000471342 TNNC2P02585 160 aa10.61□□□□□ -0.71
SF3A1-207ENST00000471342 FAM163BP0C2L3 166 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms