RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 CENPUQ71F23 418 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 PIP4K2CQ8TBX8 421 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 CEP41Q9BYV8 373 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 ACSS2Q9NR19 701 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 GPATCH2LQ9NWQ4 482 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 DNPEPQ9ULA0 475 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 FAM47DPA6NHR8 397 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 CST8O60676 142 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 CDH16O75309 829 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 RARGP13631 454 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 TPP2P29144 1249 aaPredicted RBP11.3□□□□□ -0.6
CHD3-208ENST00000470531 SREBF1P36956 1147 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 RPL7AP62424 266 aaKnown RBP11.3□□□□□ -0.6
CHD3-208ENST00000470531 PDE1BQ01064 536 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 USP4Q13107 963 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 WDR72Q3MJ13 1102 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 TAF1BQ53T94 588 aaPredicted RBP11.3□□□□□ -0.6
CHD3-208ENST00000470531 KDELC2Q7Z4H8 507 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 PDIK1LQ8N165 341 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 EPS8L1Q8TE68 723 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 FAF2Q96CS3 445 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 HEXIM2Q96MH2 286 aaKnown RBP11.3□□□□□ -0.6
CHD3-208ENST00000470531 GBP5Q96PP8 586 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 UNKQ9C0B0 810 aaKnown RBP11.3□□□□□ -0.6
CHD3-208ENST00000470531 KCNMB3Q9NPA1 279 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 SLC9A2Q9UBY0 812 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 KIF13AQ9H1H9 1805 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 F8VP50 259 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 RAP1GAPP47736 663 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 NPTX2P47972 431 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 HMGCS2P54868 508 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 JAG1P78504 1218 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 CNGA2Q16280 664 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 HACE1Q8IYU2 909 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 UBA3Q8TBC4 463 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 HES6Q96HZ4 224 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 RNF146Q9NTX7 359 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 AGO2Q9UKV8 859 aaKnown RBP11.3□□□□□ -0.6
CHD3-208ENST00000470531 MYH1P12882 1939 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 MYH4Q9Y623 1939 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 A0A1W2PPM1 405 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 H3BRJ5 948 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 HSPA6P17066 643 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 HIRAP54198 1017 aaPredicted RBP11.29□□□□□ -0.6
CHD3-208ENST00000470531 PSMC1P62191 440 aaKnown RBP11.29□□□□□ -0.6
CHD3-208ENST00000470531 EFTUD2Q15029 972 aaKnown RBP eCLIP11.29□□□□□ -0.6
CHD3-208ENST00000470531 ZC3H12AQ5D1E8 599 aaKnown RBP11.29□□□□□ -0.6
CHD3-208ENST00000470531 DUPD1Q68J44 220 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 C1orf186Q6ZWK4 172 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 RHOT1Q8IXI2 618 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 RBBP8NLQ8NC74 664 aaPredicted RBP11.29□□□□□ -0.6
CHD3-208ENST00000470531 ETNPPLQ8TBG4 499 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 TXLNGQ9NUQ3 528 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 SLC16A3O15427 465 aaKnown RBP11.29□□□□□ -0.6
CHD3-208ENST00000470531 LPXNO60711 386 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 PYGLP06737 847 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 TFDP1Q14186 410 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 BZW1Q7L1Q6 419 aaKnown RBP11.29□□□□□ -0.6
CHD3-208ENST00000470531 RSPH3Q86UC2 560 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 TTC8Q8TAM2 541 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 IWS1Q96ST2 819 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 THTPAQ9BU02 230 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 TRAIPQ9BWF2 469 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 IFT122Q9HBG6 1241 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 HEY2Q9UBP5 337 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 FAM198AQ9UFP1 575 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 TMEM59LQ9UK28 342 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 C15orf41Q9Y2V0 281 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 SPATA31A5Q5VU36 1347 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 SPATA31A7Q8IWB4 1347 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 SNX3O60493 162 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 PECAM1P16284 738 aaPredicted RBP11.29□□□□□ -0.6
CHD3-208ENST00000470531 ITGB5P18084 799 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 ADRA1DP25100 572 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 RPA3P35244 121 aaPredicted RBP11.29□□□□□ -0.6
CHD3-208ENST00000470531 ARFIP2P53365 341 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 CDH8P55286 799 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 HIF1AQ16665 826 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 AMHR2Q16671 573 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 UGCGQ16739 394 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 GRAMD1BQ3KR37 738 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 MROH9Q5TGP6 573 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 TLDC1Q6P9B6 456 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 ZCCHC23Q6ZST2 131 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 CROCCP2Q86T23 111 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 NLGN1Q8N2Q7 840 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 ZNF570Q96NI8 536 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 AGAP3Q96P47 875 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 NINJ2Q9NZG7 142 aa11.29□□□□□ -0.6
CHD3-208ENST00000470531 HAUS5O94927 633 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 TTC4O95801 387 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 CFHP08603 1231 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 NPR1P16066 1061 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 RARRES1P49788 294 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 SESN2P58004 480 aaPredicted RBP11.28□□□□□ -0.6
CHD3-208ENST00000470531 TMEM154Q6P9G4 183 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 MFSD7Q6UXD7 560 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 PODNQ7Z5L7 613 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 FITM2Q8N6M3 262 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 P3H4Q92791 437 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms