RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FRMD5Q7Z6J6 570 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 USP37Q86T82 979 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 BEST2Q8NFU1 509 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 DLGAP2Q9P1A6 1054 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 TIMM13Q9Y5L4 95 aaPredicted RBP18■□□□□ 0.47
CCDC28B-204ENST00000469003 DCHS1Q96JQ0 3298 aa18■□□□□ 0.47
CCDC28B-204ENST00000469003 ANK1P16157 1881 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 ANKRD63C9JTQ0 380 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 DCNP07585 359 aaKnown RBP17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 TYMPP19971 482 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 PAX3P23760 479 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 PRKCQQ04759 706 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 TWF1Q12792 350 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 SNW1Q13573 536 aaKnown RBP17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 MLF2Q15773 248 aaPredicted RBP17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 ZC2HC1CQ53FD0 456 aaPredicted RBP17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 JADE1Q6IE81 842 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 SLFN12LQ6IEE8 588 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 IQCEQ6IPM2 695 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 POTEHQ6S545 545 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 DSTYKQ6XUX3 929 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 PDZD4Q76G19 769 aaPredicted RBP17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 PJA1Q8NG27 643 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 TCEAL4Q96EI5 215 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 FAM212AQ96EL1 285 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 INTS4Q96HW7 963 aaKnown RBP17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 ZNF512Q96ME7 567 aaPredicted RBP17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 DDX23Q9BUQ8 820 aaKnown RBP17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 FOXQ1Q9C009 403 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 DERAQ9Y315 318 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 STYXL1Q9Y6J8 313 aa17.99■□□□□ 0.47
CCDC28B-204ENST00000469003 MIA3Q5JRA6 1907 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 OR6C75A6NL08 312 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 PPEF2O14830 753 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 TXLNAP40222 546 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 ID4P47928 161 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 LILRA4P59901 499 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 TMEM132DQ14C87 1099 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 SLC44A4Q53GD3 710 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 CYP4A22Q5TCH4 519 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 RRAGBQ5VZM2 374 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 ADALQ6DHV7 355 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 FAM173BQ6P4H8 233 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 DYMQ7RTS9 669 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 ZNF720Q7Z2F6 126 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 SFR1Q86XK3 245 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 LEMD2Q8NC56 503 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 NKD2Q969F2 451 aaPredicted RBP17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 ELSPBP1Q96BH3 223 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 HVCN1Q96D96 273 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 CLIC6Q96NY7 704 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 PLA2G2FQ9BZM2 168 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 ASB7Q9H672 318 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 CEP72Q9P209 647 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 SEL1LQ9UBV2 794 aa17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 AGO2Q9UKV8 859 aaKnown RBP17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 MORC2Q9Y6X9 1032 aaPredicted RBP17.98■□□□□ 0.47
CCDC28B-204ENST00000469003 KANSL1LA0AUZ9 987 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 TISP43B9A030 160 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 PPP1R37O75864 691 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 VNN2O95498 520 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 NFICP08651 508 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 OR4Q2P0C623 313 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 CCR2P41597 374 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 ACOT2P49753 483 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 EPHA5P54756 1037 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 POU5F1Q01860 360 aaKnown RBP17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 MYBPC2Q14324 1141 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 C9orf57Q5W0N0 161 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 TANGO2Q6ICL3 276 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 OVOS1Q6IE37 1185 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 SV2BQ7L1I2 683 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 HS6ST3Q8IZP7 471 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 SENP8Q96LD8 212 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 C2CD2Q9Y426 696 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 YIPF1Q9Y548 306 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 TSC2P49815 1807 aa17.97■□□□□ 0.47
CCDC28B-204ENST00000469003 EP300Q09472 2414 aaPredicted RBP17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 ANO9A1A5B4 782 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 MYMKA6NI61 221 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 PIRO00625 290 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 ODC1P11926 461 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 GAP43P17677 238 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 FCARP24071 287 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 CEBPZQ03701 1054 aaKnown RBP17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 GPR17Q13304 367 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 PLD1Q13393 1074 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 ASB16Q96NS5 453 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 PGLYRP2Q96PD5 576 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 STRA6Q9BX79 667 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 OSBPL6Q9BZF3 934 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 ZFP14Q9HCL3 533 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 ASAH2Q9NR71 780 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 MTMR6Q9Y217 621 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 COL4A3Q01955 1670 aa17.96■□□□□ 0.47
CCDC28B-204ENST00000469003 DMDP11532 3685 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 SPTLC1O15269 473 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 MOSPD3O75425 235 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 MYL4P12829 197 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 GLULP15104 373 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms