RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 TP53BP2Q13625 1128 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 IZUMO3Q5VZ72 239 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 AGR3Q8TD06 166 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 TGS1Q96RS0 853 aaKnown RBP9.14□□□□□ -0.95
HPS4-209ENST00000466781 MYCBPQ99417 103 aaPredicted RBP9.14□□□□□ -0.95
HPS4-209ENST00000466781 ECT2Q9H8V3 914 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 DDNO94850 711 aaPredicted RBP9.14□□□□□ -0.95
HPS4-209ENST00000466781 SLC9A1P19634 815 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 MAP3K7CLP57077 242 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 CASP8Q14790 479 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 PTRHD1Q6GMV3 140 aaKnown RBP9.14□□□□□ -0.95
HPS4-209ENST00000466781 C11orf96Q7Z7L8 435 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 ZNF579Q8NAF0 562 aaKnown RBP9.14□□□□□ -0.95
HPS4-209ENST00000466781 CHST13Q8NET6 341 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 NYAP2Q9P242 653 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 DTNAQ9Y4J8 743 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 FAM47E-STBD1D6RA91 191 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 CFAP99D6REC4 459 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 ARSEP51690 589 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 USP11P51784 963 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 SBK1Q52WX2 424 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 BEND6Q5SZJ8 279 aaPredicted RBP9.14□□□□□ -0.95
HPS4-209ENST00000466781 FAM180AQ6UWF9 173 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 GLB1LQ6UWU2 654 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 ANO5Q75V66 913 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 RNF180Q86T96 592 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 GPC2Q8N158 579 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 SLC7A14Q8TBB6 771 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 FAM161BQ96MY7 647 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 OSBPL10Q9BXB5 764 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 CYP4F11Q9HBI6 524 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 ABCB6Q9NP58 842 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 ZFATQ9P243 1243 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 DCTN4Q9UJW0 460 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 SNX9Q9Y5X1 595 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 NPHP3-ACAD11A0A0J9YXS1 232 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 EIF3DO15371 548 aaKnown RBP eCLIP9.13□□□□□ -0.95
HPS4-209ENST00000466781 KRT16P08779 473 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 PRCPP42785 496 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 ACTR2P61160 394 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 USP50Q70EL3 339 aaPredicted RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 HS6ST3Q8IZP7 471 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 ARL8AQ96BM9 186 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 PPP1R36Q96LQ0 422 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 GOLPH3LQ9H4A5 285 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 LATS2Q9NRM7 1088 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 NOP53Q9NZM5 478 aaKnown RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 CCDC22O60826 627 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 CDH2P19022 906 aaPredicted RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 SLC1A1P43005 524 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 RCAN1P53805 252 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 TWF1Q12792 350 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 COBLL1Q53SF7 1204 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 CENPPQ6IPU0 288 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 ARHGAP18Q8N392 663 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 TSEN34Q9BSV6 310 aaKnown RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 AURKCQ9UQB9 309 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 CCDC78A2IDD5 438 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 FAM187AA6NFU0 413 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 RGS4P49798 205 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 PCSK7Q16549 785 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 ZKSCAN4Q969J2 545 aaPredicted RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 PABPC5Q96DU9 382 aaKnown RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 VCPKMTQ9H867 229 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 ENTPD7Q9NQZ7 604 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 BCL9O00512 1426 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 H2AFYO75367 372 aaKnown RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 SERPINI2O75830 405 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 IL18RAPO95256 599 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 PDIA6Q15084 440 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 HIST2H2ACQ16777 129 aaPredicted RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 HIST2H2AA3Q6FI13 130 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 SARM1Q6SZW1 724 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 MB21D2Q8IYB1 491 aaPredicted RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 FAM162AQ96A26 154 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 CACNA2D2Q9NY47 1150 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 SLC25A13Q9UJS0 675 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 COPG1Q9Y678 874 aaKnown RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 ZNF609O15014 1411 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 MYO1GB0I1T2 1018 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 PRR23D1E9PI22 279 aaPredicted RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 RTN2O75298 545 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 PRR23D2P0DMB1 279 aaPredicted RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 EPB42P16452 691 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 MZF1P28698 734 aaPredicted RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 RGS7P49802 495 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 SESN2P58004 480 aaPredicted RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 RARS2Q5T160 578 aaKnown RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 TDRD10Q5VZ19 366 aaKnown RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 LMBRD2Q68DH5 695 aaPredicted RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 CCDC137Q6PK04 289 aaKnown RBP9.13□□□□□ -0.95
HPS4-209ENST00000466781 RCOR2Q8IZ40 523 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 AGAP3Q96P47 875 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 MTMR4Q9NYA4 1195 aa9.13□□□□□ -0.95
HPS4-209ENST00000466781 H0Y3Z8 333 aa9.12□□□□□ -0.95
HPS4-209ENST00000466781 GOLGA8TH3BQL2 631 aa9.12□□□□□ -0.95
HPS4-209ENST00000466781 MAGEB2O15479 319 aa9.12□□□□□ -0.95
HPS4-209ENST00000466781 PRR29P0C7W0 189 aa9.12□□□□□ -0.95
HPS4-209ENST00000466781 MRPS25P82663 173 aaKnown RBP9.12□□□□□ -0.95
HPS4-209ENST00000466781 TMEM62Q0P6H9 643 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms