RNA–Protein interactions for RNA: ENST00000460940.5

APTX-209, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,874 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-209	ENST00000460940	CCDC183	Q5T5S1	534 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	FAM171A1	Q5VUB5	890 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	CEP135	Q66GS9	1140 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	ISM2	Q6H9L7	571 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	CD300LG	Q6UXG3	332 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	INTS8	Q75QN2	995 aa	Known RBP	11.95	□□□□□ -0.5
APTX-209	ENST00000460940	C17orf53	Q8N3J3	647 aa	Predicted RBP	11.95	□□□□□ -0.5
APTX-209	ENST00000460940	RDH13	Q8NBN7	331 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	SUSD3	Q96L08	255 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	EMILIN2	Q9BXX0	1053 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	MTMR12	Q9C0I1	747 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	TLE6	Q9H808	572 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	HIDE1	A8MVS5	230 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	PPP1R3G	B7ZBB8	358 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	PIR	O00625	290 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	LILRB3	O75022	631 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	DLAT	P10515	647 aa	Known RBP	11.95	□□□□□ -0.5
APTX-209	ENST00000460940	CD44	P16070	742 aa	Known RBP	11.95	□□□□□ -0.5
APTX-209	ENST00000460940	PSMC2	P35998	433 aa	Known RBP	11.95	□□□□□ -0.5
APTX-209	ENST00000460940	GUCY2F	P51841	1108 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	CLDN10	P78369	228 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	PAK1	Q13153	545 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	DUSP6	Q16828	381 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	KIAA0319	Q5VV43	1072 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	RBM43	Q6ZSC3	357 aa	Known RBP	11.95	□□□□□ -0.5
APTX-209	ENST00000460940	FAM186B	Q8IYM0	893 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	LRRC52	Q8N7C0	313 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	EFHB	Q8N7U6	833 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	C1orf127	Q8N9H9	656 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	MLKL	Q8NB16	471 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	TMC2	Q8TDI7	906 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	PIK3R5	Q8WYR1	880 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	CCDC127	Q96BQ5	260 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	RXFP1	Q9HBX9	757 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	PAXBP1	Q9Y5B6	917 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	PCDHGC5	Q9Y5F6	944 aa		11.95	□□□□□ -0.5
APTX-209	ENST00000460940	PTPRJ	Q12913	1337 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	AKAP3	O75969	853 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	SLC34A2	O95436	690 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	C1R	P00736	705 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	SRGAP2B	P0DMP2	458 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	EPB41	P11171	864 aa	Known RBP	11.94	□□□□□ -0.5
APTX-209	ENST00000460940	TNNI1	P19237	187 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	CA8	P35219	290 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	NRIP1	P48552	1158 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	CASP4	P49662	377 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	TAF6	P49848	677 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	RBP5	P82980	135 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	HYAL1	Q12794	435 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	CCDC85B	Q15834	202 aa	Predicted RBP	11.94	□□□□□ -0.5
APTX-209	ENST00000460940	SV2C	Q496J9	727 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	RTP2	Q5QGT7	225 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	ANKRD40	Q6AI12	368 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	TAS1R1	Q7RTX1	841 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	ADGRD2	Q7Z7M1	963 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	PPFIBP1	Q86W92	1011 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	APPL2	Q8NEU8	664 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	ZNF397	Q8NF99	534 aa	Predicted RBP	11.94	□□□□□ -0.5
APTX-209	ENST00000460940	PARD3B	Q8TEW8	1205 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	NELFB	Q8WX92	580 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	CEP63	Q96MT8	703 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	KCNF1	Q9H3M0	494 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	FNIP2	Q9P278	1114 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	DACH1	Q9UI36	760 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	PCDHB8	Q9UN66	801 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	COG5	Q9UP83	839 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940	CTNND2	Q9UQB3	1225 aa		11.94	□□□□□ -0.5
APTX-209	ENST00000460940		M0QZQ0	153 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	IKBKB	O14920	756 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	ITGB3	P05106	788 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	ADH1A	P07327	375 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	KRT13	P13646	458 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	POLR2B	P30876	1174 aa	Known RBP	11.93	□□□□□ -0.5
APTX-209	ENST00000460940	BRCC3	P46736	316 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	LILRA4	P59901	499 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	SKIV2L	Q15477	1246 aa	Known RBP	11.93	□□□□□ -0.5
APTX-209	ENST00000460940	KLHL10	Q6JEL2	608 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	TTI2	Q6NXR4	508 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	ANKS3	Q6ZW76	656 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	OR5B17	Q8NGF7	314 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	AUTS2	Q8WXX7	1259 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	PPM1E	Q8WY54	764 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	RIN2	Q8WYP3	895 aa	Predicted RBP	11.93	□□□□□ -0.5
APTX-209	ENST00000460940	PABPC5	Q96DU9	382 aa	Known RBP	11.93	□□□□□ -0.5
APTX-209	ENST00000460940	PYCARD	Q9ULZ3	195 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	TRIM49B	A6NDI0	452 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	LRRIQ3	A6PVS8	624 aa	Predicted RBP	11.93	□□□□□ -0.5
APTX-209	ENST00000460940	PPEF2	O14830	753 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	ODC1	P11926	461 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	NDUFV1	P49821	464 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	VAMP7	P51809	220 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	PMS1	P54277	932 aa	Known RBP	11.93	□□□□□ -0.5
APTX-209	ENST00000460940	MCCD1	P59942	119 aa	Predicted RBP	11.93	□□□□□ -0.5
APTX-209	ENST00000460940	BFSP1	Q12934	665 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	MYO1E	Q12965	1108 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	PSMD5	Q16401	504 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	CTC1	Q2NKJ3	1217 aa		11.93	□□□□□ -0.5
APTX-209	ENST00000460940	CT47A1	Q5JQC4	288 aa	Predicted RBP	11.93	□□□□□ -0.5
APTX-209	ENST00000460940	LMBRD2	Q68DH5	695 aa	Predicted RBP	11.93	□□□□□ -0.5
APTX-209	ENST00000460940	DSTYK	Q6XUX3	929 aa		11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 24 ms