RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 SPRED2Q7Z698 418 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 SLC39A11Q8N1S5 342 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 BCL7CQ8WUZ0 217 aaPredicted RBP10.94□□□□□ -0.66
UPF2-204ENST00000460569 TIFAQ96CG3 184 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 IGSF21Q96ID5 467 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 NAP1L5Q96NT1 182 aaPredicted RBP10.94□□□□□ -0.66
UPF2-204ENST00000460569 SAMD11Q96NU1 681 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 TGS1Q96RS0 853 aaKnown RBP10.94□□□□□ -0.66
UPF2-204ENST00000460569 INTS2Q9H0H0 1204 aaKnown RBP10.94□□□□□ -0.66
UPF2-204ENST00000460569 XYLT2Q9H1B5 865 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 SLC28A3Q9HAS3 691 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 SPG21Q9NZD8 308 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 SF3B1O75533 1304 aaKnown RBP eCLIP10.93□□□□□ -0.66
UPF2-204ENST00000460569 KPNA7A9QM74 516 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 SPTLC1O15269 473 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 TEX33O43247 280 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 CBFA2T2O43439 604 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 TRAPPC3O43617 180 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 FGF18O76093 207 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 TPM3P06753 285 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 BMPR1AP36894 532 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 AARSP49588 968 aaKnown RBP eCLIP10.93□□□□□ -0.66
UPF2-204ENST00000460569 TNNC1P63316 161 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 LRMPQ12912 555 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 SYCP1Q15431 976 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 SGSM1Q2NKQ1 1148 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 UVSSAQ2YD98 709 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 WDR72Q3MJ13 1102 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 LRIT3Q3SXY7 679 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 TIGD5Q53EQ6 642 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 TRIM65Q6PJ69 517 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 CD300LGQ6UXG3 332 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 SCARA5Q6ZMJ2 495 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 KLHL23Q8NBE8 558 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 EHBP1Q8NDI1 1231 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 TAF4BQ92750 862 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 PCMTD1Q96MG8 357 aaPredicted RBP10.93□□□□□ -0.66
UPF2-204ENST00000460569 NT5C1BQ96P26 610 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 LSM14BQ9BX40 385 aaKnown RBP10.93□□□□□ -0.66
UPF2-204ENST00000460569 XPO4Q9C0E2 1151 aaKnown RBP10.93□□□□□ -0.66
UPF2-204ENST00000460569 CERS4Q9HA82 394 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 RTN4Q9NQC3 1192 aaKnown RBP10.93□□□□□ -0.66
UPF2-204ENST00000460569 NXF1Q9UBU9 619 aaKnown RBP10.93□□□□□ -0.66
UPF2-204ENST00000460569 POLIQ9UNA4 740 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 SNX9Q9Y5X1 595 aa10.93□□□□□ -0.66
UPF2-204ENST00000460569 GOLGA6L3A6NEY3 463 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 HUS1O60921 280 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 STAU1O95793 577 aaKnown RBP10.92□□□□□ -0.66
UPF2-204ENST00000460569 ODC1P11926 461 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 P4HA1P13674 534 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 SLC9A1P19634 815 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 PAX3P23760 479 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 PON1P27169 355 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 KLK7P49862 253 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 ERVK-21P61565 698 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 ELAVL2Q12926 359 aaKnown RBP10.92□□□□□ -0.66
UPF2-204ENST00000460569 PTPN21Q16825 1174 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 SARM1Q6SZW1 724 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 FBXO22Q8NEZ5 403 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 LMO3Q8TAP4 145 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 SUSD3Q96L08 255 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 SENP8Q96LD8 212 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 ERGIC2Q96RQ1 377 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 MMS19Q96T76 1030 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 C11orf84Q9BUA3 381 aaPredicted RBP10.92□□□□□ -0.66
UPF2-204ENST00000460569 PLVAPQ9BX97 442 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 TRIM5Q9C035 493 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 NIF3L1Q9GZT8 377 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 VRTNQ9H8Y1 702 aa10.92□□□□□ -0.66
UPF2-204ENST00000460569 APOBEC3GQ9HC16 384 aaKnown RBP10.92□□□□□ -0.66
UPF2-204ENST00000460569 RANBP2P49792 3224 aaKnown RBP10.92□□□□□ -0.66
UPF2-204ENST00000460569 ARHGEF37A1IGU5 675 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 C5orf67F2Z3F1 127 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 CYB561D2O14569 222 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 AP5Z1O43299 807 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 CSPG5O95196 566 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 RB1P06400 928 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 TKTP29401 623 aaKnown RBP10.91□□□□□ -0.66
UPF2-204ENST00000460569 RAP1GAPP47736 663 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 APBA1Q02410 837 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 KRT17Q04695 432 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 KCNMA1Q12791 1236 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 NR1I3Q14994 352 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 FAM171A1Q5VUB5 890 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 CEP57Q86XR8 500 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 ARHGEF19Q8IW93 802 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 PPM1KQ8N3J5 372 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 APPL2Q8NEU8 664 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 ARNTL2Q8WYA1 636 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 TATDN2Q93075 761 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 B3GALT6Q96L58 329 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 HERC2P3Q9BVR0 1158 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 VN1R3Q9BXE9 311 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 GPR62Q9BZJ7 368 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 SMYD3Q9H7B4 428 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 ALG13Q9NP73 1137 aaKnown RBP10.91□□□□□ -0.66
UPF2-204ENST00000460569 GDAP2Q9NXN4 497 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 PCDHB8Q9UN66 801 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 L1RE1Q9UN81 338 aa10.91□□□□□ -0.66
UPF2-204ENST00000460569 SIK3Q9Y2K2 1263 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms