RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 INTS2Q9H0H0 1204 aaKnown RBP13.25□□□□□ -0.29
HDAC4-206ENST00000460235 CWH43Q9H720 699 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 APEX2Q9UBZ4 518 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 FBXL5Q9UKA1 691 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 PLAGL2Q9UPG8 496 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 LZTS1Q9Y250 596 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 PRG3Q9Y2Y8 225 aaPredicted RBP13.25□□□□□ -0.29
HDAC4-206ENST00000460235 MRPL42Q9Y6G3 142 aaKnown RBP13.25□□□□□ -0.29
HDAC4-206ENST00000460235 BRCA2P51587 3418 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 COL4A6Q14031 1691 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 PTPRJQ12913 1337 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 H7C4K7 107 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 MEFVO15553 781 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-206ENST00000460235 TYMPP19971 482 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 CTNNB1P35222 781 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 LHX1P48742 406 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 SLC11A1P49279 550 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 GATMP50440 423 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 AFF1P51825 1210 aaKnown RBP13.24□□□□□ -0.29
HDAC4-206ENST00000460235 WNT7BP56706 349 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 PLCB3Q01970 1234 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 GCNT1Q02742 428 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 SOX4Q06945 474 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-206ENST00000460235 SYCP1Q15431 976 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 USP41Q3LFD5 358 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 PDE12Q6L8Q7 609 aaKnown RBP13.24□□□□□ -0.29
HDAC4-206ENST00000460235 TRIM65Q6PJ69 517 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 CACNA2D4Q7Z3S7 1137 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 PPFIBP1Q86W92 1011 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 PPM1KQ8N3J5 372 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 IGSF21Q96ID5 467 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 SUSD3Q96L08 255 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 XPO4Q9C0E2 1151 aaKnown RBP13.24□□□□□ -0.29
HDAC4-206ENST00000460235 NXF1Q9UBU9 619 aaKnown RBP13.24□□□□□ -0.29
HDAC4-206ENST00000460235 SIX4Q9UIU6 781 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 SNX9Q9Y5X1 595 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 PDE4DIPQ5VU43 2346 aa13.24□□□□□ -0.29
HDAC4-206ENST00000460235 ITIH6Q6UXX5 1313 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 TMEM265A0A087WTH1 108 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 CYB561D2O14569 222 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 VNN1O95497 513 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 CST3P01034 146 aaPredicted RBP13.23□□□□□ -0.29
HDAC4-206ENST00000460235 PON1P27169 355 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 PCSK1P29120 753 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 AARSP49588 968 aaKnown RBP eCLIP13.23□□□□□ -0.29
HDAC4-206ENST00000460235 BPIFB4P59827 614 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 LRIT3Q3SXY7 679 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 FIGNQ5HY92 759 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 PPP2R2DQ66LE6 453 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 SPECC1LQ69YQ0 1117 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.23□□□□□ -0.29
HDAC4-206ENST00000460235 ANKS3Q6ZW76 656 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 APTXQ7Z2E3 356 aaKnown RBP13.23□□□□□ -0.29
HDAC4-206ENST00000460235 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.23□□□□□ -0.29
HDAC4-206ENST00000460235 DDX53Q86TM3 631 aaKnown RBP13.23□□□□□ -0.29
HDAC4-206ENST00000460235 DRC7Q8IY82 874 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 SLC39A11Q8N1S5 342 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 SENP8Q96LD8 212 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 NAP1L5Q96NT1 182 aaPredicted RBP13.23□□□□□ -0.29
HDAC4-206ENST00000460235 SPAG5Q96R06 1193 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 CRACR2AQ9BSW2 395 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 LSM14BQ9BX40 385 aaKnown RBP13.23□□□□□ -0.29
HDAC4-206ENST00000460235 XYLT2Q9H1B5 865 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 SNX25Q9H3E2 840 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 GOLGA2P5Q9HBQ8 144 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.23□□□□□ -0.29
HDAC4-206ENST00000460235 DNAJB4Q9UDY4 337 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 MYO6Q9UM54 1294 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 PCDHB8Q9UN66 801 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 TDRD15B5MCY1 1934 aaKnown RBP13.23□□□□□ -0.29
HDAC4-206ENST00000460235 DNAH12Q6ZR08 3092 aa13.23□□□□□ -0.29
HDAC4-206ENST00000460235 FSD2A1L4K1 749 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 LINC01553A4QN01 128 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 C5orf67F2Z3F1 127 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 M0QZQ0 153 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 TACC1O75410 805 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 CA3P07451 260 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 GUCY2FP51841 1108 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 RABGGTBP53611 331 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 ERVK-21P61565 698 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 YWHAHQ04917 246 aaPredicted RBP13.22□□□□□ -0.29
HDAC4-206ENST00000460235 CUL2Q13617 745 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 FUT10Q6P4F1 479 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 TMCO2Q7Z6W1 182 aaPredicted RBP13.22□□□□□ -0.29
HDAC4-206ENST00000460235 UNC93AQ86WB7 457 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 PPP2R3CQ969Q6 453 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 TIFAQ96CG3 184 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 TNIP3Q96KP6 325 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 TTPALQ9BTX7 342 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 LMAN2LQ9H0V9 348 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 PRO3102Q9H379 93 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 UBE2TQ9NPD8 197 aaPredicted RBP13.22□□□□□ -0.29
HDAC4-206ENST00000460235 CEP72Q9P209 647 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 KIAA1257Q9ULG3 409 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 CEP290O15078 2479 aa13.22□□□□□ -0.29
HDAC4-206ENST00000460235 FGF18O76093 207 aa13.21□□□□□ -0.29
HDAC4-206ENST00000460235 SOD2P04179 222 aa13.21□□□□□ -0.29
HDAC4-206ENST00000460235 CYP11A1P05108 521 aa13.21□□□□□ -0.29
HDAC4-206ENST00000460235 URODP06132 367 aa13.21□□□□□ -0.29
HDAC4-206ENST00000460235 UCHL3P15374 230 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms